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# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/dev-lang/R/R-2.15.1.ebuild,v 1.2 2012/07/04 19:27:38 bicatali Exp $
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EAPI=4
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inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
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BCP=${PN}-20120306.bash_completion
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DESCRIPTION="Language and environment for statistical computing and graphics"
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HOMEPAGE="http://www.r-project.org/"
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SRC_URI="mirror://cran/src/base/R-2/${P}.tar.gz
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bash-completion? ( http://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )"
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LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
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SLOT="0"
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KEYWORDS="~alpha ~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-fbsd ~x86-linux ~x64-macos"
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IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png profile readline static-libs tiff tk X"
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REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
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CDEPEND="app-arch/bzip2
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app-text/ghostscript-gpl
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dev-libs/libpcre
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virtual/blas
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virtual/fortran
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cairo? ( x11-libs/cairo[X] x11-libs/pango )
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icu? ( dev-libs/icu )
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jpeg? ( virtual/jpeg )
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lapack? ( virtual/lapack )
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perl? ( dev-lang/perl )
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png? ( media-libs/libpng )
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readline? ( sys-libs/readline )
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tk? ( dev-lang/tk )
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X? ( x11-libs/libXmu x11-misc/xdg-utils )"
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DEPEND="${CDEPEND}
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virtual/pkgconfig
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doc? (
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virtual/latex-base
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dev-texlive/texlive-fontsrecommended
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)"
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RDEPEND="${CDEPEND}
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( || ( <sys-libs/zlib-1.2.5.1-r1 >=sys-libs/zlib-1.2.5.1-r2[minizip] ) )
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app-arch/xz-utils
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java? ( >=virtual/jre-1.5 )"
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RESTRICT="minimal? ( test )"
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R_DIR="${EPREFIX}/usr/$(get_libdir)/${PN}"
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pkg_setup() {
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if use openmp; then
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FORTRAN_NEED_OPENMP=1
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tc-has-openmp || die "Please enable openmp support in your compiler"
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fi
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fortran-2_pkg_setup
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filter-ldflags -Wl,-Bdirect -Bdirect
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# avoid using existing R installation
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unset R_HOME
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# Temporary fix for bug #419761
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if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
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append-flags -fno-ipa-cp-clone
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fi
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}
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src_prepare() {
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# gentoo bug #322965 (not applied upstream)
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# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14505
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epatch "${FILESDIR}"/${PN}-2.11.1-parallel.patch
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# respect ldflags (not applied upstream)
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# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14506
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epatch "${FILESDIR}"/${PN}-2.12.1-ldflags.patch
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# gentoo bug #383431
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# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14951
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epatch "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch
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# https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14953
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epatch "${FILESDIR}"/${PN}-2.14.1-rmath-shared.patch
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# fix packages.html for doc (gentoo bug #205103)
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sed -i \
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-e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
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src/library/tools/R/Rd.R || die
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# fix Rscript path when installed (gentoo bug #221061)
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sed -i \
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-e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
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src/unix/Makefile.in || die "sed unix Makefile failed"
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# fix HTML links to manual (gentoo bug #273957)
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sed -i \
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-e 's:\.\./manual/:manual/:g' \
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$(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
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use lapack && \
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export LAPACK_LIBS="$(pkg-config --libs lapack)"
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if use X; then
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export R_BROWSER="$(type -p xdg-open)"
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export R_PDFVIEWER="$(type -p xdg-open)"
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fi
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use perl && \
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export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
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# don't search /usr/local
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sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
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# Fix for Darwin (OS X)
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if [[ ${CHOST} == *-darwin* ]] ; then
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sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
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-e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
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-e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
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-e "/SHLIB_EXT/s/\.so/.dylib/" \
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-i configure.ac || die
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# sort of "undo" 2.14.1-rmath-shared.patch
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sed "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
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-i src/nmath/standalone/Makefile.in || die
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fi
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AT_M4DIR=m4 eaclocal
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eautoconf
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}
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src_configure() {
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econf \
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--enable-byte-compiled-packages \
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--enable-R-shlib \
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--disable-R-framework \
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--with-system-zlib \
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--with-system-bzlib \
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--with-system-pcre \
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--with-system-xz \
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--with-blas="$(pkg-config --libs blas)" \
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--docdir="${EPREFIX}/usr/share/doc/${PF}" \
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rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
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$(use_enable nls) \
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$(use_enable openmp) \
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$(use_enable profile R-profiling) \
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$(use_enable profile memory-profiling) \
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$(use_enable static-libs static) \
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$(use_enable static-libs R-static-lib) \
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$(use_with cairo) \
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$(use_with icu ICU) \
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$(use_with jpeg jpeglib) \
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$(use_with lapack) \
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$(use_with !minimal recommended-packages) \
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$(use_with png libpng) \
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$(use_with readline) \
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$(use_with tiff libtiff) \
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$(use_with tk tcltk) \
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$(use_with X x)
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}
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src_compile() {
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export VARTEXFONTS="${T}/fonts"
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emake
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emake -C src/nmath/standalone shared $(use static-libs && echo static)
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use doc && emake info pdf
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}
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src_install() {
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default
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emake -C src/nmath/standalone DESTDIR="${D}" install
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if use doc; then
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emake DESTDIR="${D}" install-info install-pdf
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dosym ../manual /usr/share/doc/${PF}/html/manual
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fi
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cat > 99R <<-EOF
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LDPATH=${R_DIR}/lib
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R_HOME=${R_DIR}
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EOF
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doenvd 99R
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use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN}
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# The buildsystem has a different understanding of install_names than what
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# we require. Since it builds modules like shared objects (wrong), many
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# objects (all modules) get an incorrect install_name. Fixing the build
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# system here is not really trivial.
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if [[ ${CHOST} == *-darwin* ]] ; then
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local mod
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pushd "${ED}"/usr/lib/R > /dev/null
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for mod in $(find . -name "*.dylib") ; do
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mod=${mod#./}
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install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
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"${mod}"
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done
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popd > /dev/null
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fi
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}
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pkg_postinst() {
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if use java; then
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einfo "Re-initializing java paths for ${P}"
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R CMD javareconf
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fi
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}
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