/[gentoo-x86]/dev-lang/R/R-2.15.2.ebuild
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Revision 1.1 - (show annotations) (download)
Fri Oct 26 21:44:05 2012 UTC (21 months ago) by calchan
Branch: MAIN
Version bump.

(Portage version: 2.1.11.24/cvs/Linux x86_64)

1 # Copyright 1999-2012 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/dev-lang/R/R-2.15.1.ebuild,v 1.2 2012/07/04 19:27:38 bicatali Exp $
4
5 EAPI=4
6
7 inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs
8
9 BCP=${PN}-20120306.bash_completion
10 DESCRIPTION="Language and environment for statistical computing and graphics"
11 HOMEPAGE="http://www.r-project.org/"
12 SRC_URI="mirror://cran/src/base/R-2/${P}.tar.gz
13 bash-completion? ( http://dev.gentoo.org/~bicatali/distfiles/${BCP}.bz2 )"
14
15 LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
16 SLOT="0"
17 KEYWORDS="~alpha ~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-fbsd ~x86-linux ~x64-macos"
18 IUSE="bash-completion cairo doc icu java jpeg lapack minimal nls openmp perl png profile readline static-libs tiff tk X"
19 REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )"
20
21 CDEPEND="app-arch/bzip2
22 app-text/ghostscript-gpl
23 dev-libs/libpcre
24 virtual/blas
25 virtual/fortran
26 cairo? ( x11-libs/cairo[X] x11-libs/pango )
27 icu? ( dev-libs/icu )
28 jpeg? ( virtual/jpeg )
29 lapack? ( virtual/lapack )
30 perl? ( dev-lang/perl )
31 png? ( media-libs/libpng )
32 readline? ( sys-libs/readline )
33 tk? ( dev-lang/tk )
34 X? ( x11-libs/libXmu x11-misc/xdg-utils )"
35
36 DEPEND="${CDEPEND}
37 virtual/pkgconfig
38 doc? (
39 virtual/latex-base
40 dev-texlive/texlive-fontsrecommended
41 )"
42
43 RDEPEND="${CDEPEND}
44 ( || ( <sys-libs/zlib-1.2.5.1-r1 >=sys-libs/zlib-1.2.5.1-r2[minizip] ) )
45 app-arch/xz-utils
46 java? ( >=virtual/jre-1.5 )"
47
48 RESTRICT="minimal? ( test )"
49
50 R_DIR="${EPREFIX}/usr/$(get_libdir)/${PN}"
51
52 pkg_setup() {
53 if use openmp; then
54 FORTRAN_NEED_OPENMP=1
55 tc-has-openmp || die "Please enable openmp support in your compiler"
56 fi
57 fortran-2_pkg_setup
58 filter-ldflags -Wl,-Bdirect -Bdirect
59 # avoid using existing R installation
60 unset R_HOME
61 # Temporary fix for bug #419761
62 if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then
63 append-flags -fno-ipa-cp-clone
64 fi
65 }
66
67 src_prepare() {
68 # gentoo bug #322965 (not applied upstream)
69 # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14505
70 epatch "${FILESDIR}"/${PN}-2.11.1-parallel.patch
71
72 # respect ldflags (not applied upstream)
73 # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14506
74 epatch "${FILESDIR}"/${PN}-2.12.1-ldflags.patch
75
76 # gentoo bug #383431
77 # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14951
78 epatch "${FILESDIR}"/${PN}-2.13.1-zlib_header_fix.patch
79
80 # https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14953
81 epatch "${FILESDIR}"/${PN}-2.14.1-rmath-shared.patch
82
83 # fix packages.html for doc (gentoo bug #205103)
84 sed -i \
85 -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
86 src/library/tools/R/Rd.R || die
87
88 # fix Rscript path when installed (gentoo bug #221061)
89 sed -i \
90 -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${R_DIR}\"':" \
91 src/unix/Makefile.in || die "sed unix Makefile failed"
92
93 # fix HTML links to manual (gentoo bug #273957)
94 sed -i \
95 -e 's:\.\./manual/:manual/:g' \
96 $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
97
98 use lapack && \
99 export LAPACK_LIBS="$(pkg-config --libs lapack)"
100
101 if use X; then
102 export R_BROWSER="$(type -p xdg-open)"
103 export R_PDFVIEWER="$(type -p xdg-open)"
104 fi
105 use perl && \
106 export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
107
108 # don't search /usr/local
109 sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
110 # Fix for Darwin (OS X)
111 if [[ ${CHOST} == *-darwin* ]] ; then
112 sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
113 -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
114 -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
115 -e "/SHLIB_EXT/s/\.so/.dylib/" \
116 -i configure.ac || die
117
118 # sort of "undo" 2.14.1-rmath-shared.patch
119 sed "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
120 -i src/nmath/standalone/Makefile.in || die
121 fi
122
123 AT_M4DIR=m4 eaclocal
124 eautoconf
125 }
126
127 src_configure() {
128 econf \
129 --enable-byte-compiled-packages \
130 --enable-R-shlib \
131 --disable-R-framework \
132 --with-system-zlib \
133 --with-system-bzlib \
134 --with-system-pcre \
135 --with-system-xz \
136 --with-blas="$(pkg-config --libs blas)" \
137 --docdir="${EPREFIX}/usr/share/doc/${PF}" \
138 rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
139 $(use_enable nls) \
140 $(use_enable openmp) \
141 $(use_enable profile R-profiling) \
142 $(use_enable profile memory-profiling) \
143 $(use_enable static-libs static) \
144 $(use_enable static-libs R-static-lib) \
145 $(use_with cairo) \
146 $(use_with icu ICU) \
147 $(use_with jpeg jpeglib) \
148 $(use_with lapack) \
149 $(use_with !minimal recommended-packages) \
150 $(use_with png libpng) \
151 $(use_with readline) \
152 $(use_with tiff libtiff) \
153 $(use_with tk tcltk) \
154 $(use_with X x)
155 }
156
157 src_compile() {
158 export VARTEXFONTS="${T}/fonts"
159 emake
160 emake -C src/nmath/standalone shared $(use static-libs && echo static)
161 use doc && emake info pdf
162 }
163
164 src_install() {
165 default
166 emake -C src/nmath/standalone DESTDIR="${D}" install
167
168 if use doc; then
169 emake DESTDIR="${D}" install-info install-pdf
170 dosym ../manual /usr/share/doc/${PF}/html/manual
171 fi
172
173 cat > 99R <<-EOF
174 LDPATH=${R_DIR}/lib
175 R_HOME=${R_DIR}
176 EOF
177 doenvd 99R
178 use bash-completion && newbashcomp "${WORKDIR}"/${BCP} ${PN}
179 # The buildsystem has a different understanding of install_names than what
180 # we require. Since it builds modules like shared objects (wrong), many
181 # objects (all modules) get an incorrect install_name. Fixing the build
182 # system here is not really trivial.
183 if [[ ${CHOST} == *-darwin* ]] ; then
184 local mod
185 pushd "${ED}"/usr/lib/R > /dev/null
186 for mod in $(find . -name "*.dylib") ; do
187 mod=${mod#./}
188 install_name_tool -id "${EPREFIX}/usr/lib/R/${mod}" \
189 "${mod}"
190 done
191 popd > /dev/null
192 fi
193 }
194
195 pkg_postinst() {
196 if use java; then
197 einfo "Re-initializing java paths for ${P}"
198 R CMD javareconf
199 fi
200 }

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