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layout.conf: explicitly specify empty masters
Bug #470670 - gentoo's council says to deprecate EAPIs 1 and 2.
remove cache-format 'pms' - as announced
Turn on new manifest-hashes.
Update comment for new manifest-hashes with the date it goes live and a link to the gentoo-dev-announce message.
add note about removal of cache-formats=pms
Bug #409445 - enable new md5-dict cache format
layout.conf: comment on bug #406407
layout.conf: add update-changelog = true for newer repoman to control the default for writing changelog entries upon commit
Preperation for Manifest2 new hashes per GLEP59.
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