/[gentoo-x86]/sci-biology/allpaths/allpaths-2.0.ebuild
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Contents of /sci-biology/allpaths/allpaths-2.0.ebuild

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Revision 1.2 - (hide annotations) (download)
Wed Jul 8 03:50:03 2009 UTC (5 years, 2 months ago) by weaver
Branch: MAIN
Changes since 1.1: +7 -3 lines
Typo and collision fixes
(Portage version: 2.2_rc30/cvs/Linux x86_64)

1 weaver 1.1 # Copyright 1999-2009 Gentoo Foundation
2     # Distributed under the terms of the GNU General Public License v2
3 weaver 1.2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-2.0.ebuild,v 1.1 2009/07/07 23:09:24 weaver Exp $
4 weaver 1.1
5     EAPI="2"
6    
7     DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
8     HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
9     SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.tar.gz
10     ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.manual.docx"
11    
12     LICENSE="Whitehead-MIT"
13     SLOT="0"
14     IUSE=""
15     KEYWORDS="~amd64 ~x86"
16    
17     # TODO: info message on failure instructing to run gcc-config
18     DEPEND=">=sys-devel/gcc-4.3.2"
19     RDEPEND=""
20    
21     S="${WORKDIR}"
22    
23     src_prepare() {
24 weaver 1.2 rm -rf libxerces* xerces_include || die
25 weaver 1.1 }
26    
27     src_install() {
28     rm -rf bin/auxfiles
29 weaver 1.2 exeinto /usr/share/${PN}/bin
30     doexe bin/* || die
31     echo "PATH=\"/usr/share/${PN}/bin\"" > "${S}/99${PN}"
32     doenvd "${S}/99${PN}" || die
33     dosym /usr/share/${PN}/bin/RunAllPaths /usr/bin/RunAllPaths || die
34 weaver 1.1 insinto /usr/share/doc/${PF}
35     doins "${DISTDIR}/${P}.manual.docx"
36     }

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