/[gentoo-x86]/sci-biology/allpaths/allpaths-2.0.ebuild
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Contents of /sci-biology/allpaths/allpaths-2.0.ebuild

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Revision 1.2 - (show annotations) (download)
Wed Jul 8 03:50:03 2009 UTC (5 years, 3 months ago) by weaver
Branch: MAIN
Changes since 1.1: +7 -3 lines
Typo and collision fixes
(Portage version: 2.2_rc30/cvs/Linux x86_64)

1 # Copyright 1999-2009 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-2.0.ebuild,v 1.1 2009/07/07 23:09:24 weaver Exp $
4
5 EAPI="2"
6
7 DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
8 HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
9 SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.tar.gz
10 ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.manual.docx"
11
12 LICENSE="Whitehead-MIT"
13 SLOT="0"
14 IUSE=""
15 KEYWORDS="~amd64 ~x86"
16
17 # TODO: info message on failure instructing to run gcc-config
18 DEPEND=">=sys-devel/gcc-4.3.2"
19 RDEPEND=""
20
21 S="${WORKDIR}"
22
23 src_prepare() {
24 rm -rf libxerces* xerces_include || die
25 }
26
27 src_install() {
28 rm -rf bin/auxfiles
29 exeinto /usr/share/${PN}/bin
30 doexe bin/* || die
31 echo "PATH=\"/usr/share/${PN}/bin\"" > "${S}/99${PN}"
32 doenvd "${S}/99${PN}" || die
33 dosym /usr/share/${PN}/bin/RunAllPaths /usr/bin/RunAllPaths || die
34 insinto /usr/share/doc/${PF}
35 doins "${DISTDIR}/${P}.manual.docx"
36 }

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