/[gentoo-x86]/sci-biology/allpaths/allpaths-2.0.ebuild
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Contents of /sci-biology/allpaths/allpaths-2.0.ebuild

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Revision 1.4 - (show annotations) (download)
Tue Nov 24 20:48:06 2009 UTC (5 years ago) by fauli
Branch: MAIN
Changes since 1.3: +2 -2 lines
stable x86, bug 290927
(Portage version: 2.1.6.13/cvs/Linux i686)

1 # Copyright 1999-2009 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-2.0.ebuild,v 1.3 2009/08/20 16:56:10 weaver Exp $
4
5 EAPI="2"
6
7 inherit base
8
9 DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
10 HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
11 SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.tar.gz
12 ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.manual.docx"
13
14 LICENSE="Whitehead-MIT"
15 SLOT="0"
16 IUSE=""
17 KEYWORDS="~amd64 x86"
18
19 # TODO: info message on failure instructing to run gcc-config
20 DEPEND=">=sys-devel/gcc-4.3.2"
21 RDEPEND=""
22
23 PATCHES=(
24 "${FILESDIR}"/${P}-gcc-x86-no-autocast.patch
25 )
26
27 S="${WORKDIR}"
28
29 src_prepare() {
30 base_src_prepare
31 rm -rf libxerces* xerces_include || die
32 }
33
34 src_install() {
35 rm -rf bin/auxfiles
36 exeinto /usr/share/${PN}/bin
37 doexe bin/* || die
38 echo "PATH=\"/usr/share/${PN}/bin\"" > "${S}/99${PN}"
39 doenvd "${S}/99${PN}" || die
40 dosym /usr/share/${PN}/bin/RunAllPaths /usr/bin/RunAllPaths || die
41 insinto /usr/share/doc/${PF}
42 doins "${DISTDIR}/${P}.manual.docx"
43 }

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