/[gentoo-x86]/sci-biology/allpaths/allpaths-2.0.ebuild
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Contents of /sci-biology/allpaths/allpaths-2.0.ebuild

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Revision 1.7 - (show annotations) (download)
Wed Nov 20 07:29:19 2013 UTC (8 months, 1 week ago) by jlec
Branch: MAIN
CVS Tags: HEAD
Changes since 1.6: +1 -1 lines
FILE REMOVED
superseeded by sci-biology/allpathslg
Upstream wants anybody to move over

1 # Copyright 1999-2012 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-2.0.ebuild,v 1.6 2012/11/19 10:27:46 jlec Exp $
4
5 EAPI="2"
6
7 inherit base
8
9 DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
10 HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
11 SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.tar.gz
12 ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.manual.docx"
13
14 LICENSE="Whitehead-MIT"
15 SLOT="0"
16 IUSE=""
17 KEYWORDS="amd64 x86"
18
19 DEPEND="!sci-biology/allpathslg"
20 RDEPEND="${DEPEND}"
21
22 PATCHES=(
23 "${FILESDIR}"/${P}-gcc-x86-no-autocast.patch
24 )
25
26 S="${WORKDIR}"
27
28 src_prepare() {
29 base_src_prepare
30 rm -rf libxerces* xerces_include || die
31 }
32
33 src_install() {
34 rm -rf bin/auxfiles
35 exeinto /usr/share/${PN}/bin
36 doexe bin/* || die
37 echo "PATH=\"/usr/share/${PN}/bin\"" > "${S}/99${PN}"
38 doenvd "${S}/99${PN}" || die
39 dosym /usr/share/${PN}/bin/RunAllPaths /usr/bin/RunAllPaths || die
40 insinto /usr/share/doc/${PF}
41 doins "${DISTDIR}/${P}.manual.docx"
42 }

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