/[gentoo-x86]/sci-biology/allpaths/allpaths-2.0.ebuild
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Contents of /sci-biology/allpaths/allpaths-2.0.ebuild

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Revision 1.7 - (hide annotations) (download)
Wed Nov 20 07:29:19 2013 UTC (11 months ago) by jlec
Branch: MAIN
CVS Tags: HEAD
Changes since 1.6: +1 -1 lines
FILE REMOVED
superseeded by sci-biology/allpathslg
Upstream wants anybody to move over

1 jlec 1.6 # Copyright 1999-2012 Gentoo Foundation
2 weaver 1.1 # Distributed under the terms of the GNU General Public License v2
3 jlec 1.7 # $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-2.0.ebuild,v 1.6 2012/11/19 10:27:46 jlec Exp $
4 weaver 1.1
5     EAPI="2"
6    
7 weaver 1.3 inherit base
8    
9 weaver 1.1 DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
10     HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
11     SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.tar.gz
12     ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-2-0/allpaths-2.0.manual.docx"
13    
14     LICENSE="Whitehead-MIT"
15     SLOT="0"
16     IUSE=""
17 pacho 1.5 KEYWORDS="amd64 x86"
18 weaver 1.1
19 jlec 1.6 DEPEND="!sci-biology/allpathslg"
20     RDEPEND="${DEPEND}"
21 weaver 1.1
22 weaver 1.3 PATCHES=(
23     "${FILESDIR}"/${P}-gcc-x86-no-autocast.patch
24     )
25    
26 weaver 1.1 S="${WORKDIR}"
27    
28     src_prepare() {
29 weaver 1.3 base_src_prepare
30 weaver 1.2 rm -rf libxerces* xerces_include || die
31 weaver 1.1 }
32    
33     src_install() {
34     rm -rf bin/auxfiles
35 weaver 1.2 exeinto /usr/share/${PN}/bin
36     doexe bin/* || die
37     echo "PATH=\"/usr/share/${PN}/bin\"" > "${S}/99${PN}"
38     doenvd "${S}/99${PN}" || die
39     dosym /usr/share/${PN}/bin/RunAllPaths /usr/bin/RunAllPaths || die
40 weaver 1.1 insinto /usr/share/doc/${PF}
41     doins "${DISTDIR}/${P}.manual.docx"
42     }

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