/[gentoo-x86]/sci-biology/allpaths/allpaths-3.1.ebuild
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Contents of /sci-biology/allpaths/allpaths-3.1.ebuild

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Revision 1.1 - (hide annotations) (download)
Tue Jan 26 20:43:21 2010 UTC (4 years, 10 months ago) by weaver
Branch: MAIN
Version bump
(Portage version: 2.2_rc30/cvs/Linux x86_64, RepoMan options: --force)

1 weaver 1.1 # Copyright 1999-2010 Gentoo Foundation
2     # Distributed under the terms of the GNU General Public License v2
3     # $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-2.0.ebuild,v 1.4 2009/11/24 20:48:06 fauli Exp $
4    
5     EAPI="2"
6    
7     inherit base
8    
9     DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
10     HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
11     SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/allpaths-${PV}.tgz
12     ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/AllPathsV3_Manual_r1.0.docx"
13    
14     LICENSE="Whitehead-MIT"
15     SLOT="3"
16     IUSE=""
17     KEYWORDS="~amd64"
18    
19     DEPEND=">=sys-devel/gcc-4.3.2"
20     RDEPEND=""
21    
22     S="${WORKDIR}/AllPaths"
23    
24     src_compile() {
25     base_src_compile
26     emake install_scripts || die
27     }
28    
29     src_install() {
30     exeinto /usr/share/${P}/bin
31     find bin -type f -executable | xargs doexe || die
32     echo "PATH=\"/usr/share/${P}/bin\"" > "${S}/99${P}"
33     doenvd "${S}/99${P}" || die
34     dosym /usr/share/${P}/bin/RunAllPaths3G /usr/bin/RunAllPaths3G || die
35     insinto /usr/share/doc/${PF}
36     doins "${DISTDIR}/AllPathsV3_Manual_r1.0.docx"
37     }

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