/[gentoo-x86]/sci-biology/allpaths/allpaths-3.1.ebuild
Gentoo

Contents of /sci-biology/allpaths/allpaths-3.1.ebuild

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1.2 - (show annotations) (download)
Thu Aug 30 07:32:21 2012 UTC (23 months, 3 weeks ago) by jlec
Branch: MAIN
Changes since 1.1: +17 -15 lines
sci-biology/allpaths: Fix for gcc-4.7

(Portage version: 2.2.0_alpha123/cvs/Linux x86_64)

1 # Copyright 1999-2012 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-3.1.ebuild,v 1.1 2010/01/26 20:43:21 weaver Exp $
4
5 EAPI=4
6
7 inherit base
8
9 DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
10 HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
11 SRC_URI="
12 ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/allpaths-${PV}.tgz
13 ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/AllPathsV3_Manual_r1.0.docx"
14
15 LICENSE="Whitehead-MIT"
16 SLOT="3"
17 IUSE=""
18 KEYWORDS="~amd64 ~x86"
19
20 S="${WORKDIR}/AllPaths"
21
22 PATCHES=( "${FILESDIR}"/${P}-gcc4.7.patch )
23
24 src_compile() {
25 base_src_compile
26 emake install_scripts
27 }
28
29 src_install() {
30 exeinto /usr/libexec/${P}/
31 find bin -type f -executable | xargs doexe || die
32
33 echo "PATH=\"/usr/libexec/${P}/\"" > "${S}/50${P}"
34 doenvd "${S}/50${P}" || die
35
36 dosym /usr/libexec/${P}/RunAllPaths3G /usr/bin/RunAllPaths3G
37
38 dodoc "${DISTDIR}/AllPathsV3_Manual_r1.0.docx"
39 }

  ViewVC Help
Powered by ViewVC 1.1.20