sci-biology/allpathslg/allpathslg-40063.ebuild

# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-40063.ebuild,v 1.1 2011/12/28 03:48:22 weaver Exp $

EAPI=4

inherit autotools flag-o-matic

DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"

LICENSE="as-is"
SLOT="0"
IUSE=""
KEYWORDS="~amd64"

DEPEND="dev-libs/boost
        >=sys-devel/gcc-4.3.3
        sci-biology/vaal"
RDEPEND=""

src_prepare() {
        sed -i 's/-ggdb3//' configure.ac || die
        eautoreconf
}

src_install() {
        einstall || die
        # Provided by sci-biology/vaal
        for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
                rm "${D}/usr/bin/$i" || die
        done
}
1	# Copyright 1999-2011 Gentoo Foundation
2	# Distributed under the terms of the GNU General Public License v2
3	# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-40063.ebuild,v 1.1 2011/12/28 03:48:22 weaver Exp $
4
5	EAPI=4
6
7	inherit autotools flag-o-matic
8
9	DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
10	HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
11	SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
12
13	LICENSE="as-is"
14	SLOT="0"
15	IUSE=""
16	KEYWORDS="~amd64"
17
18	DEPEND="dev-libs/boost
19	>=sys-devel/gcc-4.3.3
20	sci-biology/vaal"
21	RDEPEND=""
22
23	src_prepare() {
24	sed -i 's/-ggdb3//' configure.ac \|\| die
25	eautoreconf
26	}
27
28	src_install() {
29	einstall \|\| die
30	# Provided by sci-biology/vaal
31	for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
32	rm "${D}/usr/bin/$i" \|\| die
33	done
34	}