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jlec |
1.1 |
# Copyright 1999-2012 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/arb/arb-5.2.ebuild,v 1.4 2012/03/04 09:55:06 jlec Exp $ |
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EAPI=4 |
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inherit eutils toolchain-funcs |
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DESCRIPTION="Tools for DNA/RNA sequence database handling and data analysis, phylogenetic analysis" |
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HOMEPAGE="http://www.arb-home.de/" |
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SRC_URI=" |
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http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz |
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http://dev.gentoo.org/~jlec/distfiles/${P}-linker.patch.xz" |
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SLOT="0" |
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LICENSE="arb" |
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IUSE="+opengl" |
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KEYWORDS="~amd64 ~x86" |
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CDEPEND="app-text/sablotron |
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media-libs/libpng |
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media-libs/tiff |
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www-client/lynx |
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x11-libs/libXaw |
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x11-libs/libXpm |
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x11-libs/openmotif:0 |
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opengl? ( |
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media-libs/glew |
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media-libs/freeglut |
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|| ( |
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media-libs/mesa[motif] |
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( media-libs/mesa x11-libs/libGLw ) ) )" |
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DEPEND="${CDEPEND} |
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sys-process/time" |
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RDEPEND="${CDEPEND} |
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sci-visualization/gnuplot" |
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# Recommended: libmotif3 gv xfig xterm treetool java |
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src_unpack() { |
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unpack ${A} |
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mv arbsrc* ${P} |
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} |
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src_prepare() { |
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epatch \ |
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"${WORKDIR}"/${P}-linker.patch \ |
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"${FILESDIR}"/5.1-libs.patch \ |
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"${FILESDIR}"/5.1-bfr-overflow.patch \ |
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"${FILESDIR}"/5.2-libpng15.patch \ |
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"${FILESDIR}"/${PN}-5.2-gcc-47.patch |
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sed \ |
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-e 's/all: checks/all:/' \ |
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-e "s/GCC:=.*/GCC=$(tc-getCC) ${CFLAGS}/" \ |
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-e "s/GPP:=.*/GPP=$(tc-getCXX) ${CXXFLAGS}/" \ |
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-i "${S}/Makefile" || die |
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cp config.makefile.template config.makefile |
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sed -i -e '/^[ \t]*read/ d' -e 's/SHELL_ANS=0/SHELL_ANS=1/' "${S}/arb_install.sh" || die |
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use amd64 && sed -i -e 's/ARB_64 := 0/ARB_64 := 1/' config.makefile |
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use opengl || sed -i -e 's/OPENGL := 1/OPENGL := 0/' config.makefile |
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emake ARBHOME="${S}" links |
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} |
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src_compile() { |
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emake ARBHOME="${S}" PATH="${PATH}:${S}/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${S}/lib" tarfile |
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use amd64 && mv arb.tgz arb.64.gentoo.tgz |
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use x86 && mv arb.tgz arb.32.gentoo.tgz |
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ln -s arb.*.tgz arb.tgz || die |
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} |
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src_install() { |
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ARBHOME="${D}/opt/arb" "${S}/arb_install.sh" || die |
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cat <<- EOF > "${S}/99${PN}" |
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ARBHOME=/opt/arb |
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PATH=/opt/arb/bin |
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LD_LIBRARY_PATH=/opt/arb/lib |
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EOF |
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doenvd "${S}/99${PN}" |
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} |
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