sci-biology/infernal/infernal-1.0.2-r1.ebuild

# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild,v 1.3 2011/02/11 13:04:33 hwoarang Exp $

EAPI=4

inherit eutils

DESCRIPTION="Inference of RNA alignments"
HOMEPAGE="http://infernal.janelia.org/"
SRC_URI="ftp://selab.janelia.org/pub/software/${PN}/${P}.tar.gz"

LICENSE="GPL-3"
SLOT="0"
IUSE="mpi"
KEYWORDS="amd64 x86"

DEPEND="mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"

src_prepare() {
        epatch \
                "${FILESDIR}"/${P}-parallel-build.patch \
                "${FILESDIR}"/${P}-overflows.patch \
                "${FILESDIR}"/${P}-perl-5.16.patch \
                "${FILESDIR}"/${P}-ldflags.patch
}

src_configure() {
        econf \
                --prefix="${D}/usr" \
                $(use_enable mpi)
}

src_install() {
        default

        pushd documentation/manpages > /dev/null
        for i in *;
                do newman ${i} ${i/.man/.1}
        done
        popd > /dev/null

        insinto /usr/share/${PN}
        doins -r benchmarks tutorial intro matrices
        dodoc 00README* Userguide.pdf documentation/release-notes/*
}
1	# Copyright 1999-2012 Gentoo Foundation
2	# Distributed under the terms of the GNU General Public License v2
3	# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild,v 1.3 2011/02/11 13:04:33 hwoarang Exp $
4
5	EAPI=4
6
7	inherit eutils
8
9	DESCRIPTION="Inference of RNA alignments"
10	HOMEPAGE="http://infernal.janelia.org/"
11	SRC_URI="ftp://selab.janelia.org/pub/software/${PN}/${P}.tar.gz"
12
13	LICENSE="GPL-3"
14	SLOT="0"
15	IUSE="mpi"
16	KEYWORDS="amd64 x86"
17
18	DEPEND="mpi? ( virtual/mpi )"
19	RDEPEND="${DEPEND}"
20
21	src_prepare() {
22	epatch \
23	"${FILESDIR}"/${P}-parallel-build.patch \
24	"${FILESDIR}"/${P}-overflows.patch \
25	"${FILESDIR}"/${P}-perl-5.16.patch \
26	"${FILESDIR}"/${P}-ldflags.patch
27	}
28
29	src_configure() {
30	econf \
31	--prefix="${D}/usr" \
32	$(use_enable mpi)
33	}
34
35	src_install() {
36	default
37
38	pushd documentation/manpages > /dev/null
39	for i in *;
40	do newman ${i} ${i/.man/.1}
41	done
42	popd > /dev/null
43
44	insinto /usr/share/${PN}
45	doins -r benchmarks tutorial intro matrices
46	dodoc 00README* Userguide.pdf documentation/release-notes/*
47	}