sci-biology/primer3/primer3-2.3.0.ebuild

# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.3.0.ebuild,v 1.3 2012/07/19 12:21:52 jlec Exp $

EAPI=4

inherit toolchain-funcs

DESCRIPTION="Primer Design for PCR reactions"
HOMEPAGE="http://primer3.sourceforge.net/"
SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"

SLOT="0"
LICENSE="GPL-2"
IUSE=""
KEYWORDS="~amd64 ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"

DEPEND="dev-lang/perl"
RDEPEND=""

src_prepare() {
        if [[ ${CHOST} == *-darwin* ]]; then
                sed -e "s:LIBOPTS ='-static':LIBOPTS =:" -i Makefile || die
        fi
        perl -i -ne 's/\$\(CPP\)/'$(tc-getCXX)'/; print unless /^(CC|CPP|CFLAGS|LDFLAGS)\s*=/' src/Makefile || die
        sed \
                -e '/oligotm/s:-o $@:$(LDFLAGS) -o $@:g' \
                -e '/long_seq_tm_test/s:-o $@:$(LDFLAGS) -o $@:g' \
                -e 's:CFLAGS:CXXFLAGS:g' \
                -i src/Makefile || die
}

src_compile() {
        emake -C src
}

src_test () {
        emake -C test
}

src_install () {
        dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core}
        dodoc src/release_notes.txt example
        insinto /opt/primer3_config
        doins -r src/primer3_config/* primer3*settings.txt
        dohtml primer3_manual.htm
}
1	# Copyright 1999-2012 Gentoo Foundation
2	# Distributed under the terms of the GNU General Public License v2
3	# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.3.0.ebuild,v 1.3 2012/07/19 12:21:52 jlec Exp $
4
5	EAPI=4
6
7	inherit toolchain-funcs
8
9	DESCRIPTION="Primer Design for PCR reactions"
10	HOMEPAGE="http://primer3.sourceforge.net/"
11	SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
12
13	SLOT="0"
14	LICENSE="GPL-2"
15	IUSE=""
16	KEYWORDS="~amd64 ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
17
18	DEPEND="dev-lang/perl"
19	RDEPEND=""
20
21	src_prepare() {
22	if [[ ${CHOST} == -darwin ]]; then
23	sed -e "s:LIBOPTS ='-static':LIBOPTS =:" -i Makefile \|\| die
24	fi
25	perl -i -ne 's/\$\(CPP\)/'$(tc-getCXX)'/; print unless /^(CC\|CPP\|CFLAGS\|LDFLAGS)\s*=/' src/Makefile \|\| die
26	sed \
27	-e '/oligotm/s:-o $@:$(LDFLAGS) -o $@:g' \
28	-e '/long_seq_tm_test/s:-o $@:$(LDFLAGS) -o $@:g' \
29	-e 's:CFLAGS:CXXFLAGS:g' \
30	-i src/Makefile \|\| die
31	}
32
33	src_compile() {
34	emake -C src
35	}
36
37	src_test () {
38	emake -C test
39	}
40
41	src_install () {
42	dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core}
43	dodoc src/release_notes.txt example
44	insinto /opt/primer3_config
45	doins -r src/primer3_config/* primer3*settings.txt
46	dohtml primer3_manual.htm
47	}