sci-biology/psipred/psipred-3.2.1.ebuild

# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.2.1.ebuild,v 1.3 2012/07/11 02:33:24 mr_bones_ Exp $

EAPI=4

inherit eutils prefix toolchain-funcs versionator

MY_P="${PN}$(delete_all_version_separators)"

DESCRIPTION="Protein Secondary Structure Prediction"
HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz"

LICENSE="psipred"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="test"

RDEPEND="
        sci-biology/ncbi-tools
        sci-biology/ncbi-tools++"
DEPEND=""

S="${WORKDIR}"

src_prepare() {
        rm -f bin/*
        epatch \
                "${FILESDIR}"/3.1-Makefile.patch \
                "${FILESDIR}"/3.1-path.patch \
                "${FILESDIR}"/3.2-fgets.patch
        eprefixify runpsipred*
}

src_compile() {
        emake -C src CC=$(tc-getCC)
}

src_install() {
        emake -C src DESTDIR="${D}" install
        dobin runpsipred* bin/* BLAST+/runpsipred*
        insinto /usr/share/${PN}
        doins -r data
        dodoc README
        newdoc BLAST+/README README-blast
}

pkg_postinst() {
        elog "Please use the update_blastdb.pl in order to"
        elog "maintain your own local blastdb"
}
1	# Copyright 1999-2012 Gentoo Foundation
2	# Distributed under the terms of the GNU General Public License v2
3	# $Header: /var/cvsroot/gentoo-x86/sci-biology/psipred/psipred-3.2.1.ebuild,v 1.3 2012/07/11 02:33:24 mr_bones_ Exp $
4
5	EAPI=4
6
7	inherit eutils prefix toolchain-funcs versionator
8
9	MY_P="${PN}$(delete_all_version_separators)"
10
11	DESCRIPTION="Protein Secondary Structure Prediction"
12	HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
13	SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz"
14
15	LICENSE="psipred"
16	SLOT="0"
17	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
18	IUSE="test"
19
20	RDEPEND="
21	sci-biology/ncbi-tools
22	sci-biology/ncbi-tools++"
23	DEPEND=""
24
25	S="${WORKDIR}"
26
27	src_prepare() {
28	rm -f bin/*
29	epatch \
30	"${FILESDIR}"/3.1-Makefile.patch \
31	"${FILESDIR}"/3.1-path.patch \
32	"${FILESDIR}"/3.2-fgets.patch
33	eprefixify runpsipred*
34	}
35
36	src_compile() {
37	emake -C src CC=$(tc-getCC)
38	}
39
40	src_install() {
41	emake -C src DESTDIR="${D}" install
42	dobin runpsipred* bin/* BLAST+/runpsipred*
43	insinto /usr/share/${PN}
44	doins -r data
45	dodoc README
46	newdoc BLAST+/README README-blast
47	}
48
49	pkg_postinst() {
50	elog "Please use the update_blastdb.pl in order to"
51	elog "maintain your own local blastdb"
52	}