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jlec |
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# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/ccpn/ccpn-2.2.2_p120809-r1.ebuild,v 1.1 2012/08/09 16:32:10 jlec Exp $
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EAPI=4
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PYTHON_DEPEND="2:2.5"
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PYTHON_USE_WITH="ssl tk"
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inherit eutils portability python toolchain-funcs versionator
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PATCHSET="${PV##*_p}"
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MY_PN="${PN}mr"
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MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})"
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MY_MAJOR="$(get_version_component_range 1-3)"
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DESCRIPTION="The Collaborative Computing Project for NMR"
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SRC_URI="http://www-old.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
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[[ -n ${PATCHSET} ]] && SRC_URI="${SRC_URI} http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
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HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
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SLOT="0"
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LICENSE="|| ( CCPN LGPL-2.1 )"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE="extendnmr +opengl"
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RDEPEND="
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dev-lang/tk[threads]
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dev-python/numpy
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dev-tcltk/tix
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=sci-libs/ccpn-data-"${MY_MAJOR}"*
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sci-biology/psipred
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x11-libs/libXext
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x11-libs/libX11
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opengl? (
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media-libs/freeglut
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dev-python/pyglet )"
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# We need to fix this
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# sci-chemistry/mdd
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DEPEND="${RDEPEND}"
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PDEPEND="
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extendnmr? (
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>=sci-chemistry/aria-2.3.2-r1
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sci-chemistry/prodecomp )"
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RESTRICT="mirror"
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S="${WORKDIR}"/${MY_PN}/${MY_PN}$(get_version_component_range 1-2 ${PV})
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pkg_setup() {
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python_set_active_version 2
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python_pkg_setup
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}
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src_prepare() {
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[[ -n ${PATCHSET} ]] && \
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epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
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epatch "${FILESDIR}"/${MY_PV}-parallel.patch
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sed \
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-e "/PSIPRED_DIR/s:'data':'share/psipred/data':g" \
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-e "s:weights_s:weights:g" \
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-i python/ccpnmr/analysis/wrappers/Psipred.py || die
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local tk_ver
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local myconf
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tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
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if use opengl; then
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GLUT_NEED_INIT="-DNEED_GLUT_INIT"
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IGNORE_GL_FLAG=""
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GL_FLAG="-DUSE_GL_TRUE"
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GL_DIR="${EPREFIX}/usr"
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GL_LIB="-lglut -lGLU -lGL"
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GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
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GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
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else
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IGNORE_GL_FLAG="-DIGNORE_GL"
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GL_FLAG="-DUSE_GL_FALSE"
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fi
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GLUT_NOT_IN_GL=""
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GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
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rm -rf data model doc license || die
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sed \
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-e "s|/usr|${EPREFIX}/usr|g" \
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-e "s|^\(CC =\).*|\1 $(tc-getCC)|g" \
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-e "s|^\(OPT_FLAG =\).*|\1 ${CFLAGS}|g" \
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-e "s|^\(LINK_FLAGS =.*\)|\1 ${LDFLAGS}|g" \
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-e "s|^\(IGNORE_GL_FLAG =\).*|\1 ${IGNORE_GL_FLAG}|g" \
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-e "s|^\(GL_FLAG =\).*|\1 ${GL_FLAG}|g" \
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-e "s|^\(GL_DIR =\).*|\1 ${GL_DIR}|g" \
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-e "s|^\(GL_LIB =\).*|\1 ${GL_LIB}|g" \
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-e "s|^\(GL_LIB_FLAGS =\).*|\1 ${GL_LIB_FLAGS}|g" \
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-e "s|^\(GL_INCLUDE_FLAGS =\).*|\1 ${GL_INCLUDE_FLAGS}|g" \
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-e "s|^\(GLUT_NEED_INIT =\).*|\1 ${GLUT_NEED_INIT}|g" \
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-e "s|^\(GLUT_NOT_IN_GL =\).*|\1|g" \
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-e "s|^\(X11_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
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-e "s|^\(TCL_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
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-e "s|^\(TK_LIB_FLAGS =\).*|\1 -L${EPREFIX}/usr/$(get_libdir)|g" \
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-e "s|^\(PYTHON_INCLUDE_FLAGS =\).*|\1 -I${EPREFIX}/$(python_get_includedir)|g" \
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-e "s|^\(PYTHON_LIB =\).*|\1 $(python_get_library -l)|g" \
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c/environment_default.txt > c/environment.txt || die
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sed \
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-e 's:ln -s:cp -f:g' \
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-i $(find python -name linkSharedObjs) || die
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}
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src_compile() {
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emake -C c all
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emake -C c links
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}
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src_install() {
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local libdir
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local tkver
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local _wrapper
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find . -name "*.pyc" -type f -delete
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libdir=$(get_libdir)
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tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
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_wrapper="analysis dangle dataShifter depositionFileImporter eci formatConverter pipe2azara xeasy2azara"
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use extendnmr && _wrapper="${_wrapper} extendNmr"
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for wrapper in ${_wrapper}; do
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sed \
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-e "s|gentoo_sitedir|${EPREFIX}$(python_get_sitedir)|g" \
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-e "s|gentoolibdir|${EPREFIX}/usr/${libdir}|g" \
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-e "s|gentootk|${EPREFIX}/usr/${libdir}/tk${tkver}|g" \
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-e "s|gentootcl|${EPREFIX}/usr/${libdir}/tclk${tkver}|g" \
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-e "s|gentoopython|$(PYTHON -a)|g" \
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-e "s|gentoousr|${EPREFIX}/usr|g" \
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-e "s|//|/|g" \
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"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
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dobin "${T}"/${wrapper}
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done
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local in_path=$(python_get_sitedir)/${PN}
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local files
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local pydocs
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pydocs="$(find python -name doc -type d)"
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rm -rf ${pydocs} || die
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for i in python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
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sed \
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-e 's|#from __future__|from __future__|g' \
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-i ${i} || die
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done
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insinto ${in_path}
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dodir ${in_path}/c
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ebegin "Installing main files"
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doins -r python
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eend
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ebegin "Adjusting permissions"
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for _file in $(find "${ED}" -type f -name "*so"); do
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chmod 755 ${_file}
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done
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eend
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}
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pkg_postinst() {
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python_mod_optimize ${PN}
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}
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pkg_postrm() {
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python_mod_cleanup ${PN}
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}
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