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# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-libs/shogun/shogun-1.1.0.ebuild,v 1.2 2012/06/25 19:41:18 bicatali Exp $
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EAPI=4
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inherit eutils multilib versionator toolchain-funcs java-pkg-opt-2
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MYPV=$(get_version_component_range 1-2)
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MYPD=${PN}-data-0.3
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DESCRIPTION="Large Scale Machine Learning Toolbox"
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HOMEPAGE="http://shogun-toolbox.org/"
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SRC_URI="ftp://shogun-toolbox.org/shogun/releases/${MYPV}/sources/${P}.tar.bz2
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test? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )
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examples? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )"
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LICENSE="GPL-3 free-noncomm"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE="arpack bzip2 doc examples glpk gzip hdf5 json lapack lpsolve mono lua lzma
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lzo java R ruby octave python readline snappy static-libs superlu test xml"
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RDEPEND="sci-libs/gsl
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sys-libs/zlib
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arpack? ( sci-libs/arpack )
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bzip2? ( app-arch/bzip2 )
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glpk? ( sci-mathematics/glpk )
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gzip? ( app-arch/gzip )
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hdf5? ( sci-libs/hdf5 )
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java? ( >=virtual/jdk-1.5 )
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json? ( dev-libs/json-c )
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lapack? ( virtual/cblas virtual/lapack )
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lpsolve? ( sci-mathematics/lpsolve )
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lua? ( dev-lang/lua )
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lzo? ( dev-libs/lzo )
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mono? ( dev-lang/mono )
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octave? ( sci-mathematics/octave[hdf5=] )
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python? ( dev-python/numpy )
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R? ( dev-lang/R )
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readline? ( sys-libs/readline )
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ruby? ( >=dev-ruby/narray-0.6.0.1-r2 )
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snappy? ( app-arch/snappy )
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superlu? ( sci-libs/superlu )
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xml? ( dev-libs/libxml2 )"
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DEPEND="${RDEPEND}
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virtual/pkgconfig
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doc? ( app-doc/doxygen[dot] )
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java? ( dev-lang/swig dev-java/ant )
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octave? ( dev-lang/swig )
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python? ( dev-lang/swig test? ( sci-libs/scipy ) )
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ruby? ( dev-lang/swig )"
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S="${WORKDIR}/${P}/src"
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src_prepare() {
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epatch \
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"${FILESDIR}"/${P}-respect-ldflags.patch \
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"${FILESDIR}"/${P}-test-snappy.patch \
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"${FILESDIR}"/${P}-test-readline.patch
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# dist-packages is only for debian
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# remove exagarated optimizations (-O9 does not exist...)
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# use gentoo lapack framework
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sed -i \
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-e 's/dist-packages/site-packages/g' \
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-e '/^COMP_OPTS=/d' \
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-e "s:-llapack -lcblas:$(pkg-config --libs cblas lapack):g" \
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configure || die
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# disable ldconfig which violates sandbox
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# install in gentoo java standard paths
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sed -i \
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-e '/ldconfig/d' \
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-e '/share\/java/d' \
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-e '/jni/d' \
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Makefile.template || die
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}
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src_configure() {
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# define interfaces to shogun library to build
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local x iface
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for x in java lua octave python ruby ; do
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use ${x} && iface="${iface}${x}_modular,"
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done
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use mono && iface="${iface}csharp_modular,"
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use R && iface="${iface}r_modular,"
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if use static-libs; then
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iface="${iface}cmdline_static,"
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use octave && iface="${iface}octave_static,"
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use python && iface="${iface}python_static,"
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use R && iface="${iface}r_static,"
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use octave && use python && use R && iface="${iface}elwms_static,"
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fi
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iface="${iface%,}"
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# gentoo bug #302621
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use hdf5 && has_version sci-libs/hdf5[mpi] && export CXX=mpicxx CC=mpicc
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./configure \
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--disable-cpudetection \
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--destdir="${ED}" \
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--prefix="${EPREFIX}/usr" \
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--mandir="${EPREFIX}/usr/share/man" \
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--libdir="${EPREFIX}/usr/$(get_libdir)" \
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--cc="$(tc-getCC)" \
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--cxx="$(tc-getCXX)" \
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--target="${CTARGET}" \
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--interfaces=${iface} \
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$(use_enable arpack) \
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$(use_enable bzip2) \
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$(use_enable doc doxygen) \
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$(use_enable glpk) \
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$(use_enable gzip) \
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$(use_enable hdf5) \
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$(use_enable json) \
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$(use_enable lapack) \
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$(use_enable lpsolve) \
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$(use_enable lzma) \
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$(use_enable lzo) \
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$(use_enable readline) \
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$(use_enable snappy) \
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$(use_enable static-libs static) \
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$(use_enable superlu) \
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$(use_enable xml) || die
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}
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src_compile() {
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emake
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use doc && emake -C ../doc
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}
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src_test() {
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use lapack || return
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ln -s ../../${MYPD}/* ../data/
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emake DESTDIR="${D}" install
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# disable because very long and buggy dynamic paths (assumed install)
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# emake tests
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emake -C shogun check-examples
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}
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src_install() {
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default
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use static-libs || rm -f "${ED}"/usr/$(get_libdir)/*.a
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if use java; then
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java-pkg_dojar interfaces/java_modular/shogun.jar
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java-pkg_doso interfaces/java_modular/libmodshogun.so
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fi
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use doc && dohtml -r ../doc/html/*
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if use examples; then
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insinto /usr/share/doc/${PF}
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emake -C ../examples clean && doins -r ../examples
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insinto /usr/share/doc/${PF}/data
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doins -r "${WORKDIR}"/${MYPD}/*
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fi
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}
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