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procheck license added

1 jlec 1.1 PROCHECK - Stereochemical Quality of Protein Structures
2     -------------------------------------------------------
3     and AQUA for PROCHECK-NMR
4     -------------------------
5    
6     CONFIDENTIALITY AGREEMENT
7     -------------------------
8    
9    
10    
11     In regard to the PROCHECK suite of programs, specified in Appendix 1
12     herewith and the AQUA suite of programs specified in Appendix 2 herewith
13     (the Software) supplied to us, the copyright and other intellectual
14     property rights to which belong to the authors, we
15    
16     __________________________________________________________________
17    
18     undertake to the authors that we shall be bound by the following terms and
19     conditions:-
20    
21     1. We will receive the Software and any related documentation in confidence
22     and will not use the same except for the purpose of the department's own
23     research. The Software will be used only by such of our officers or
24     employees to whom it must reasonably be communicated to enable us to
25     undertake our research and who agree to be bound by the same confidence.
26     The department shall procure and enforce such agreement from its staff for
27     the benefit of the authors.
28    
29     2. The publication of research using the Software must reference
30    
31     "Laskowski R A, MacArthur M W, Moss D S & Thornton J M (1993). PROCHECK:
32     a program to check the stereochemical quality of protein
33     structures. J. Appl. Cryst., 26, 283-291."
34    
35     and
36    
37     "Rullmann J A C (1996). AQUA, Computer Program, Department of NMR
38     Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht
39     University, The Netherlands."
40    
41    
42     3. Research shall take place solely at the department's premises at
43    
44     __________________________________________________________________
45    
46     4. All forms of the Software will be kept in a reasonably secure place to
47     prevent unauthorised access.
48    
49     5. Each copy of the Software or, if not practicable then, any package
50     associated therewith shall be suitably marked (and such marking maintained)
51     with the following copyright notice: " Copyright 1992 M W MacArthur, R A
52     Laskowski, D S Moss, J A C Rullmann & J M Thornton All Rights Reserved".
53    
54     6. The Software may be modified but any changes made shall be made
55     available to the authors.
56    
57     7. The Software shall be used exclusively for academic teaching and
58     research. The Software will not be used for any commercial research or
59     research associated with an industrial company.
60    
61     8. The confidentiality obligation in paragraph one shall not apply:
62    
63     (i) to information and data known to the department at the time of
64     receipt hereunder (as evidenced by its written records);
65    
66     (ii) to information and data which was at the time of receipt in the
67     public domain or thereafter becomes so through no wrongful act of
68     the department;
69    
70     (iii) to information and data which the department receives from a third
71     party not in breach of any obligation of confidentiality owed to
72     the authors.
73    
74    
75    
76     Please sign this Undertaking and return a copy of it to indicate that you
77     have read, understood and accepted the above terms.
78    
79    
80    
81     For and on behalf of _____________________________
82    
83     _________________________________________________
84    
85     ..................................................
86    
87     Dated ............................................
88    
89    
90    
91    
92     APPENDIX 1 - DETAILS OF THE PROCHECK SUITE OF PROGRAMS PROVIDED (v.3.4.3)
93     ---------------------------------------------------------------
94    
95     Files to be included
96     --------------------
97    
98     1. anglen.f }
99     2. anglen.inc }
100     3. bplot.f }
101     4. bplot.inc }
102     5. brkcln.par }
103     6. clean.f }
104     7. gfac2pdb.f }
105     8. gfac2pdb.inc }
106     9. mplot.f }
107     10. mplot.inc } Source program files
108     11. nb.c }
109     12. pplot.f }
110     13. pplot.inc }
111     14. ps.f }
112     15. rmsdev.f }
113     16. rmsdev.inc }
114     17. secstr.f }
115     18. sstruc.par }
116     19. tplot.f }
117     20. tplot.inc }
118     21. viol2pdb.f }
119     22. viol2pdb.inc }
120     23. vplot.f }
121     24. vplot.inc }
122     25. gfac2pdb.scr }
123     26. procheck.com }
124     27. procheck.scr }
125     28. procheck_comp.com }
126     29. procheck_comp.scr }
127     30. procheck_nmr.scr }
128     31. proplot.com }
129     32. proplot.scr } Script files
130     33. proplot_comp.scr }
131     34. proplot_nmr.scr }
132     35. proplot_comp.com }
133     36. prosub.com }
134     37. setup.com }
135     38. setup.scr }
136     39. viol2pdb.scr }
137     40. convax.for }
138     41. procomp.com } Installation files
139     42. procomp.scr }
140     43. maninst.ps }
141     44. manual.tar.Z } Documentation files
142     45. nmr_manual.tar.Z }
143     46. procheck.dat }
144     47. procheck.prm } Data
145     48. procheck_comp.prm } files
146     49. procheck_nmr.prm }
147    
148    
149     APPENDIX 2 - DETAILS OF THE AQUA SUITE OF PROGRAMS PROVIDED (v.0.40)
150     -----------------------------------------------------------
151    
152     Files to be included
153     --------------------
154    
155     Source files:-
156     ------------
157    
158     AquaCalc.c AquaCalc.h
159     AquaData.h
160     AquaDist.c AquaDist.h
161     AquaFiles.c AquaFiles.h
162     AquaFuncts.c AquaFuncts.h
163     AquaFuncts_biosym.c AquaFuncts_biosym.h
164     AquaFuncts_cv.c AquaFuncts_cv.h
165     AquaFuncts_io.c AquaFuncts_io.h
166     AquaFuncts_pdb.c AquaFuncts_pdb.h
167     AquaFuncts_pdbmr.c AquaFuncts_pdbmr.h
168     AquaHow.c AquaHow.h
169     AquaMacros.h
170     AquaPseudo.c AquaPseudo.h
171     AquaStrucset.c AquaStrucset.h
172     AquaTypes.h
173     AquaWhat.c AquaWhat.h
174     Qext.c Qext.h
175     Range.c Range.h
176     cv_subs.h
177    
178     Script files:-
179     ------------
180     ReadNrv.pm* convDIANAtorsrestr qdbext*
181     aqdrst* convDISGEOdistrestr qguessc*
182     aqpc* convDISGEOtorsrestr qguessr*
183     aqpcsel convMRTABLE qhelp*
184     aquanal.pl* convXPLORdistrestr qmodr*
185     clean0* convXPLORtorsrestr qsplitr*
186     convBIOSYMdistrestr makecmm* qsumm*
187     convBIOSYMtorsrestr qconvert* qsumm_aux1*
188     convDIANAdistrestr qconvr* qsumm_aux2*
189    
190     Documentation:-
191     -------------
192     README models.txt qconvr.txt
193     aqpc.txt mr.txt qdbext.txt
194     aqua_setup.txt names.txt qext.txt
195     biosym.txt overview.txt qhelp.txt
196     chains.txt perl.txt qsumm.txt
197     conversion.txt procheck.txt restraint_format.txt
198     dbas.txt qanal.txt setup.txt
199     intro.txt qclean.txt torsion.txt
200     log.txt qconvert.txt xplor.txt
201    
202     Extras:-
203     ------
204     joinpdb* splitpdb*
205    
206    
207    
208     Please complete the above form, sign it, and then send or fax to:-
209    
210    
211     Roman Laskowski
212     European Bioinformatics Institute,
213     Wellcome Trust Genome Campus,
214     Hinxton,
215     Cambridge, CB10 1SD,
216     United Kingdom
217    
218     Fax:- +44 (0)1223 494 468
219    
220     If you have any problems either installing the software or running it,
221     please e-mail your problems to:-
222    
223     roman@ebi.ac.uk
224    
225     Questions about AQUA should be directed to Ton Rullmann at
226    
227     rull@nmr.chem.ruu.nl
228    
229    
230    

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