/[gentoo-x86]/sci-biology/bowtie/bowtie-0.12.3.ebuild
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Contents of /sci-biology/bowtie/bowtie-0.12.3.ebuild

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Revision 1.2 - (show annotations) (download)
Fri Jul 16 09:42:31 2010 UTC (9 years, 7 months ago) by fauli
Branch: MAIN
Changes since 1.1: +2 -2 lines
stable x86, bug 328413
(Portage version: 2.1.8.3/cvs/Linux i686)

1 # Copyright 1999-2010 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.3.ebuild,v 1.1 2010/03/23 07:20:14 weaver Exp $
4
5 EAPI="2"
6
7 DESCRIPTION="An ultrafast memory-efficient short read aligner"
8 HOMEPAGE="http://bowtie-bio.sourceforge.net/"
9 SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip"
10
11 LICENSE="Artistic"
12 SLOT="0"
13 IUSE=""
14 KEYWORDS="~amd64 x86"
15
16 DEPEND="app-arch/unzip"
17 RDEPEND=""
18
19 # NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de)
20 # TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS
21
22 src_prepare() {
23 sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die
24 }
25
26 src_install() {
27 dobin bowtie bowtie-* || die
28 exeinto /usr/share/${PN}/scripts
29 doexe scripts/* || die
30 newman MANUAL bowtie.1
31 dodoc AUTHORS NEWS TUTORIAL
32 }

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