/[gentoo-x86]/sci-biology/bowtie/bowtie-0.12.5.ebuild
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Contents of /sci-biology/bowtie/bowtie-0.12.5.ebuild

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Revision 1.3 - (hide annotations) (download)
Sun Aug 11 13:32:35 2013 UTC (6 years, 6 months ago) by jlec
Branch: MAIN
CVS Tags: HEAD
Changes since 1.2: +1 -1 lines
FILE REMOVED
sci-biology/bowtie: Drop old

(Portage version: 2.2.0_alpha196/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

1 weaver 1.1 # Copyright 1999-2010 Gentoo Foundation
2     # Distributed under the terms of the GNU General Public License v2
3 jlec 1.3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.5.ebuild,v 1.2 2010/09/30 07:24:16 grobian Exp $
4 weaver 1.1
5     EAPI="2"
6    
7     DESCRIPTION="An ultrafast memory-efficient short read aligner"
8     HOMEPAGE="http://bowtie-bio.sourceforge.net/"
9     SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip"
10    
11     LICENSE="Artistic"
12     SLOT="0"
13     IUSE=""
14 grobian 1.2 KEYWORDS="~amd64 ~x86 ~x64-macos"
15 weaver 1.1
16     DEPEND="app-arch/unzip"
17     RDEPEND=""
18    
19     # NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de)
20     # TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS
21    
22     src_prepare() {
23     sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die
24     }
25    
26     src_install() {
27     dobin bowtie bowtie-* || die
28     exeinto /usr/share/${PN}/scripts
29     doexe scripts/* || die
30     newman MANUAL bowtie.1
31     dodoc AUTHORS NEWS TUTORIAL
32     }

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