/[gentoo-x86]/sci-biology/bowtie/bowtie-0.12.8.ebuild
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Contents of /sci-biology/bowtie/bowtie-0.12.8.ebuild

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Revision 1.3 - (show annotations) (download)
Sat Jul 27 22:19:25 2013 UTC (6 years, 6 months ago) by ago
Branch: MAIN
CVS Tags: HEAD
Changes since 1.2: +2 -2 lines
Stable for x86, wrt bug #477134

(Portage version: 2.1.12.13/cvs/Linux x86_64, RepoMan options: --include-arches="x86", signed Manifest commit with key 7194459F)

1 # Copyright 1999-2013 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.8.ebuild,v 1.2 2013/07/21 09:59:13 ago Exp $
4
5 EAPI=4
6
7 inherit eutils toolchain-funcs
8
9 DESCRIPTION="An ultrafast memory-efficient short read aligner"
10 HOMEPAGE="http://bowtie-bio.sourceforge.net/"
11 SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip"
12
13 LICENSE="Artistic"
14 SLOT="0"
15 IUSE=""
16 KEYWORDS="amd64 x86 ~x64-macos"
17
18 DEPEND="app-arch/unzip"
19 RDEPEND=""
20
21 # NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de)
22 # TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS
23
24 src_prepare() {
25 epatch "${FILESDIR}"/${P}-gcc-47.patch
26 }
27
28 src_compile() {
29 unset CFLAGS
30 emake \
31 CC="$(tc-getCC)" \
32 CPP="$(tc-getCXX)" \
33 CXX="$(tc-getCXX)" \
34 EXTRA_FLAGS="${LDFLAGS}" \
35 RELEASE_FLAGS=""
36 }
37
38 src_install() {
39 dobin bowtie bowtie-*
40 exeinto /usr/share/${PN}/scripts
41 doexe scripts/*
42 newman MANUAL bowtie.1
43 dodoc AUTHORS NEWS TUTORIAL
44 }

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