/[gentoo-x86]/sci-biology/bowtie/bowtie-1.0.0.ebuild
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Contents of /sci-biology/bowtie/bowtie-1.0.0.ebuild

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Revision 1.2 - (show annotations) (download)
Wed Sep 18 06:50:27 2013 UTC (6 years, 4 months ago) by jlec
Branch: MAIN
CVS Tags: HEAD
Changes since 1.1: +2 -2 lines
sci-biology/bowtie: Fix location of html files, #484620

(Portage version: 2.2.6/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

1 # Copyright 1999-2013 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-1.0.0.ebuild,v 1.1 2013/07/17 07:09:36 jlec Exp $
4
5 EAPI=5
6
7 inherit eutils toolchain-funcs
8
9 DESCRIPTION="An ultrafast memory-efficient short read aligner"
10 HOMEPAGE="http://bowtie-bio.sourceforge.net/"
11 SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip"
12
13 LICENSE="Artistic"
14 SLOT="0"
15 IUSE=""
16 KEYWORDS="~amd64 ~x86 ~x64-macos"
17
18 DEPEND="app-arch/unzip"
19 RDEPEND=""
20
21 src_compile() {
22 unset CFLAGS
23 emake \
24 CC="$(tc-getCC)" \
25 CPP="$(tc-getCXX)" \
26 CXX="$(tc-getCXX)" \
27 EXTRA_FLAGS="${LDFLAGS}" \
28 RELEASE_FLAGS="${CXXFLAGS}"
29 }
30
31 src_install() {
32 dobin bowtie bowtie-*
33 exeinto /usr/share/${PN}/scripts
34 doexe scripts/*
35
36 insinto /usr/share/${PN}
37 doins -r genomes indexes
38
39 newman MANUAL bowtie.1
40 dodoc AUTHORS NEWS TUTORIAL doc/README
41 dohtml doc/{manual.html,style.css}
42 }

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