/[gentoo-x86]/sci-biology/maq/maq-0.7.1-r1.ebuild
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Contents of /sci-biology/maq/maq-0.7.1-r1.ebuild

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Revision 1.5 - (hide annotations) (download)
Sun Dec 18 19:53:20 2011 UTC (8 years, 2 months ago) by phajdan.jr
Branch: MAIN
Changes since 1.4: +2 -2 lines
x86 stable wrt bug #393759

(Portage version: 2.1.10.11/cvs/Linux i686)

1 jlec 1.1 # Copyright 1999-2011 Gentoo Foundation
2     # Distributed under the terms of the GNU General Public License v2
3 phajdan.jr 1.5 # $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1-r1.ebuild,v 1.4 2011/12/15 22:37:04 jlec Exp $
4 jlec 1.1
5 jlec 1.2 EAPI=4
6 jlec 1.1
7     inherit autotools eutils
8    
9     DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
10     HOMEPAGE="http://maq.sourceforge.net/"
11     SRC_URI="
12     mirror://sourceforge/${PN}/${P}.tar.bz2
13     mirror://sourceforge/${PN}/calib-36.dat.gz"
14    
15     LICENSE="GPL-3"
16     SLOT="0"
17     IUSE=""
18 phajdan.jr 1.5 KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
19 jlec 1.1
20 jlec 1.4 RDEPEND="sys-libs/zlib"
21     DEPEND="${RDEPEND}"
22    
23 jlec 1.1 src_prepare() {
24     epatch \
25 jlec 1.2 "${FILESDIR}"/${P}-flags.patch \
26     "${FILESDIR}"/${P}-bfr-overfl.patch
27     sed \
28     -e '/ext_CFLAGS/s:-m64::g' \
29     -i configure* || die
30 jlec 1.1 eautoreconf
31     }
32    
33     src_install() {
34     default
35     insinto /usr/share/maq
36 jlec 1.2 doins "${WORKDIR}"/*.dat
37 jlec 1.1 doman maq.1
38     dodoc ${PN}.pdf
39     }

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