/[gentoo-x86]/sci-biology/maq/maq-0.7.1-r1.ebuild
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1# Copyright 1999-2011 Gentoo Foundation 1# Copyright 1999-2011 Gentoo Foundation
2# Distributed under the terms of the GNU General Public License v2 2# Distributed under the terms of the GNU General Public License v2
3# $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1-r1.ebuild,v 1.1 2011/04/14 07:46:27 jlec Exp $ 3# $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1-r1.ebuild,v 1.2 2011/12/15 22:01:03 jlec Exp $
4 4
5EAPI="4" 5EAPI=4
6 6
7inherit autotools eutils 7inherit autotools eutils
8 8
9DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences" 9DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
10HOMEPAGE="http://maq.sourceforge.net/" 10HOMEPAGE="http://maq.sourceforge.net/"
13 mirror://sourceforge/${PN}/calib-36.dat.gz" 13 mirror://sourceforge/${PN}/calib-36.dat.gz"
14 14
15LICENSE="GPL-3" 15LICENSE="GPL-3"
16SLOT="0" 16SLOT="0"
17IUSE="" 17IUSE=""
18KEYWORDS="~amd64 ~x86" 18KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
19
20DEPEND=""
21RDEPEND=""
22 19
23src_prepare() { 20src_prepare() {
24 epatch \ 21 epatch \
25 "${FILESDIR}"/${P}-flags.patch \ 22 "${FILESDIR}"/${P}-flags.patch \
26 "${FILESDIR}"/${P}-bfr-overfl.patch 23 "${FILESDIR}"/${P}-bfr-overfl.patch
24 sed \
25 -e '/ext_CFLAGS/s:-m64::g' \
26 -i configure* || die
27 eautoreconf 27 eautoreconf
28} 28}
29 29
30src_install() { 30src_install() {
31 default 31 default
32 insinto /usr/share/maq 32 insinto /usr/share/maq
33 doins "${WORKDIR}"/*.dat || die 33 doins "${WORKDIR}"/*.dat
34 doman maq.1 34 doman maq.1
35 dodoc ${PN}.pdf 35 dodoc ${PN}.pdf
36} 36}

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