/[gentoo-x86]/sci-biology/maq/maq-0.7.1-r1.ebuild
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Contents of /sci-biology/maq/maq-0.7.1-r1.ebuild

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Revision 1.1 - (show annotations) (download)
Thu Apr 14 07:46:27 2011 UTC (8 years, 11 months ago) by jlec
Branch: MAIN
Fix for _FORTIFY_SOURCE indicates presence of overflow, #363537; Don't mix FLAGS

(Portage version: 2.2.0_alpha30/cvs/Linux x86_64)

1 # Copyright 1999-2011 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1.ebuild,v 1.4 2009/04/04 19:19:39 maekke Exp $
4
5 EAPI="4"
6
7 inherit autotools eutils
8
9 DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
10 HOMEPAGE="http://maq.sourceforge.net/"
11 SRC_URI="
12 mirror://sourceforge/${PN}/${P}.tar.bz2
13 mirror://sourceforge/${PN}/calib-36.dat.gz"
14
15 LICENSE="GPL-3"
16 SLOT="0"
17 IUSE=""
18 KEYWORDS="~amd64 ~x86"
19
20 DEPEND=""
21 RDEPEND=""
22
23 src_prepare() {
24 epatch \
25 "${FILESDIR}"/${P}-flags.patch \
26 "${FILESDIR}"/${P}-bfr-overfl.patch
27 eautoreconf
28 }
29
30 src_install() {
31 default
32 insinto /usr/share/maq
33 doins "${WORKDIR}"/*.dat || die
34 doman maq.1
35 dodoc ${PN}.pdf
36 }

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