/[gentoo-x86]/sci-biology/maq/maq-0.7.1-r1.ebuild
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Contents of /sci-biology/maq/maq-0.7.1-r1.ebuild

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Revision 1.5 - (show annotations) (download)
Sun Dec 18 19:53:20 2011 UTC (8 years, 2 months ago) by phajdan.jr
Branch: MAIN
Changes since 1.4: +2 -2 lines
x86 stable wrt bug #393759

(Portage version: 2.1.10.11/cvs/Linux i686)

1 # Copyright 1999-2011 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1-r1.ebuild,v 1.4 2011/12/15 22:37:04 jlec Exp $
4
5 EAPI=4
6
7 inherit autotools eutils
8
9 DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
10 HOMEPAGE="http://maq.sourceforge.net/"
11 SRC_URI="
12 mirror://sourceforge/${PN}/${P}.tar.bz2
13 mirror://sourceforge/${PN}/calib-36.dat.gz"
14
15 LICENSE="GPL-3"
16 SLOT="0"
17 IUSE=""
18 KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
19
20 RDEPEND="sys-libs/zlib"
21 DEPEND="${RDEPEND}"
22
23 src_prepare() {
24 epatch \
25 "${FILESDIR}"/${P}-flags.patch \
26 "${FILESDIR}"/${P}-bfr-overfl.patch
27 sed \
28 -e '/ext_CFLAGS/s:-m64::g' \
29 -i configure* || die
30 eautoreconf
31 }
32
33 src_install() {
34 default
35 insinto /usr/share/maq
36 doins "${WORKDIR}"/*.dat
37 doman maq.1
38 dodoc ${PN}.pdf
39 }

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