/[gentoo-x86]/sci-biology/maq/maq-0.7.1-r1.ebuild
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Contents of /sci-biology/maq/maq-0.7.1-r1.ebuild

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Revision 1.6 - (hide annotations) (download)
Sat Jun 23 10:15:20 2012 UTC (7 years, 8 months ago) by jlec
Branch: MAIN
CVS Tags: HEAD
Changes since 1.5: +4 -3 lines
sci-biology/maq: Add patch for gcc-4.7, #422869

(Portage version: 2.2.0_alpha110/cvs/Linux x86_64)

1 jlec 1.6 # Copyright 1999-2012 Gentoo Foundation
2 jlec 1.1 # Distributed under the terms of the GNU General Public License v2
3 jlec 1.6 # $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1-r1.ebuild,v 1.5 2011/12/18 19:53:20 phajdan.jr Exp $
4 jlec 1.1
5 jlec 1.2 EAPI=4
6 jlec 1.1
7     inherit autotools eutils
8    
9     DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
10     HOMEPAGE="http://maq.sourceforge.net/"
11     SRC_URI="
12     mirror://sourceforge/${PN}/${P}.tar.bz2
13     mirror://sourceforge/${PN}/calib-36.dat.gz"
14    
15     LICENSE="GPL-3"
16     SLOT="0"
17     IUSE=""
18 phajdan.jr 1.5 KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
19 jlec 1.1
20 jlec 1.4 RDEPEND="sys-libs/zlib"
21     DEPEND="${RDEPEND}"
22    
23 jlec 1.1 src_prepare() {
24     epatch \
25 jlec 1.2 "${FILESDIR}"/${P}-flags.patch \
26 jlec 1.6 "${FILESDIR}"/${P}-bfr-overfl.patch \
27     "${FILESDIR}"/${P}-gcc-4.7.patch
28 jlec 1.2 sed \
29     -e '/ext_CFLAGS/s:-m64::g' \
30     -i configure* || die
31 jlec 1.1 eautoreconf
32     }
33    
34     src_install() {
35     default
36     insinto /usr/share/maq
37 jlec 1.2 doins "${WORKDIR}"/*.dat
38 jlec 1.1 doman maq.1
39     dodoc ${PN}.pdf
40     }

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