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authorJory A. Pratt <anarchy@gentoo.org>2016-01-03 10:43:11 -0600
committerJory A. Pratt <anarchy@gentoo.org>2016-01-03 10:43:11 -0600
commitbd611864247f545397823f2b566f1361148bb2fd (patch)
tree8da8ab6ef2a4000fb7c535ed9724db2b50af286d /dev-python
parentiproute2 - include sys/types.h when building with -iptables (diff)
downloadmusl-bd611864247f545397823f2b566f1361148bb2fd.tar.gz
musl-bd611864247f545397823f2b566f1361148bb2fd.tar.bz2
musl-bd611864247f545397823f2b566f1361148bb2fd.zip
dev-python/numphy - Add support for musl
Diffstat (limited to 'dev-python')
-rw-r--r--dev-python/numpy/Manifest9
-rw-r--r--dev-python/numpy/files/numpy-1.10.1-backport-1.patch127
-rw-r--r--dev-python/numpy/files/numpy-1.10.1-backport-2.patch73
-rw-r--r--dev-python/numpy/files/numpy-1.10.1-musl-fix.patch20
-rw-r--r--dev-python/numpy/files/numpy-1.9.2-no-hardcode-blas.patch35
-rw-r--r--dev-python/numpy/numpy-1.10.1-r1.ebuild156
6 files changed, 420 insertions, 0 deletions
diff --git a/dev-python/numpy/Manifest b/dev-python/numpy/Manifest
new file mode 100644
index 0000000..68da0e0
--- /dev/null
+++ b/dev-python/numpy/Manifest
@@ -0,0 +1,9 @@
+AUX numpy-1.10.1-backport-1.patch 6086 SHA256 386920fcba91099aedfe0c8105aa53f10f596f62d300684d802397769ba9b1e1 SHA512 359076cdf1962744f1e0381d6e690422787307400db6ca51fb8f759f6af459666e9b4aad278bf4e89848fea5277204eab9459edb092fc2d9aa8dab14096eefe9 WHIRLPOOL e9bc09688dace432c9b112535415f0c60d97eb8b464da615368c031a9a7440ff9e39092ef9d020332b91e4af1203e2ae16a78176935df4d3e7b3617bd9235a12
+AUX numpy-1.10.1-backport-2.patch 2904 SHA256 ec6faad4e0105f3f291a43defed5c0f33ca669832589372a0b6ae92d9f5e4dd1 SHA512 8e1db75cd00209762b49f636549a4afccea1467f93b4ce94e02f3ada2f8be78a70fdfea51eb98a12690ef67b84734eb24d5a647def8022a4fddfc22cda4cb512 WHIRLPOOL f8fda61187660136537af662f85d7886272bc9f3bb0d05321f950a7ed6844acbfc8b5c64cd06764e8414adfce4d9d139af6f3bf9cd72330a8862160d2144eb2b
+AUX numpy-1.10.1-musl-fix.patch 543 SHA256 2d3f0358f9a5a33f783817964d1985f48eaffb5f239f494b9a57cab1c35565d7 SHA512 b832d756e2518471c117e72bba01c5b93859d694948f545f136a12cca69dc9f9a459539fce8fde740c0822c423572ec6aa9e805a28a6d9620df36b54c52b1d8f WHIRLPOOL 8708b667ce5d86ef5e7b468d5e059cf7d3ca572fff5e462f0f12f3855e0addd0dc9170390f720b90ccbb01c330c308124596d9808ad05f8ea8c0658de63e8284
+AUX numpy-1.9.2-no-hardcode-blas.patch 1821 SHA256 a51524eb39ed9f71667e89179fda3e16a974949629b9a0acb7a0994202a2db63 SHA512 59d498f7b0a1e6f4bc37e0eb7121812e1fe974e06176c7b80e99e41c49067a618bc98d925bcb667607462f5e7823f0f55235c8ddd685e318dfb3385b7eb7dad6 WHIRLPOOL 09e8cf5f27431fa7d5028b5d73690492e7da061f8ac5b82be1d1dbcc46c61c83cb6c5c3fb5f112bb61776075b98f7e1ef7b8a9fd828986f2c4b9358d9acb8d97
+DIST numpy-1.10.1.tar.gz 4048478 SHA256 8b9f453f29ce96a14e625100d3dcf8926301d36c5f622623bf8820e748510858 SHA512 ea717bac913a8e63bf93822bddbfe7701a3de00051bf3c7020f5e22756987becb5a2f96a6a52a36fc7c2b856815a782e450099688ce86b21fa94b0076b9ef376 WHIRLPOOL 7671368bec55c7f53ffa78a509946acc998e6f4223da4f3429b82a5a38b5e0277a0f89773ec2335f8e46b5c695620a4119af5ab59734184054c31b11841de44b
+DIST numpy-html-1.9.1.zip 9839137 SHA256 12a24937f8273fcf79090c99b6c4154a0ecfc378386498cf2afe727ea171407c SHA512 647a6be9f93995aca14185e283a2b412678c6e8080fe4f14e7cc9ee63c28eebb64dea6bbe28f30ef6850a5565dd1e06928fd660ac762e9a91454d309eff96ed4 WHIRLPOOL 68c367fd0416d27b1cf43edf7ca48bc8845c02856bbbacdf63c88fe8bbffd5dd86fb3e5cdea8f669dd78adf7bcc4d184953048783802df323126c1b22baf8e92
+DIST numpy-ref-1.9.1.pdf 5318122 SHA256 3c8e5881a3460e1cc9da95fe2167044e8f832ab8e980c3606d1f353e7ac6dcee SHA512 5171bb22588117a53e0eac355520581f7817a7e7a099ae83bb73f2ac8248a60e139ae9719dc543b44f25ccf8319c9f149fec1bf5aa55d943fad06a8e6da0d9ba WHIRLPOOL 5c99daf3ae2e6bf235aed287682f1b96d5b6afc9d290f544a8baab892b39c9f6dd9f649abe3e103cc90c990d87e4d653d8157d774a8bd35eccc9cc6ac7a870f9
+DIST numpy-user-1.9.1.pdf 418111 SHA256 e1f6baed0b73f3d4b106c88924c083f9a519e860c1beb718830bf1aee1892232 SHA512 724302468a8e93daf70d379bb1ee7369953e297c40ea260f080b7aca3c9c81e619a81705bdfb2ea214da5b5325ec2b48e953eceeaa1d60c07593b00c35989f45 WHIRLPOOL f93ed20c5da7b379e3afcafab97c7eb60231ed4f73cebf18184e00b9a8a5a531fa32992f7f28f16d2714b3056c61153c29267c8c6b93cb100e06f53bced1bd6a
+EBUILD numpy-1.10.1-r1.ebuild 4293 SHA256 93ff64945e1813118fba4787b14924377c46092b6785d9ad7a3e0ba0d4567c66 SHA512 7c654383a424ab28df86e3f535acbf8833c41f244601fa34314878a0686ccaafca32379b73565ced19e47ce5d84b34c853118b21d9e15584e93647dfaca0c666 WHIRLPOOL 7082b39850bc873ad663f6cfeec46a1718e2d14a4eb22a4c0cfa0186605b94d740b1865c3e2dbf0203b993090bb18cd6ce5fc5ff046d915e95adf29f1444ab38
diff --git a/dev-python/numpy/files/numpy-1.10.1-backport-1.patch b/dev-python/numpy/files/numpy-1.10.1-backport-1.patch
new file mode 100644
index 0000000..77a3c01
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.10.1-backport-1.patch
@@ -0,0 +1,127 @@
+From 3a816a4db9b498eb64eb837fdcca0fa8ddbe063e Mon Sep 17 00:00:00 2001
+From: Allan Haldane <allan.haldane@gmail.com>
+Date: Sat, 17 Oct 2015 14:00:36 -0400
+Subject: [PATCH] BUG: recarrays viewed as subarrays don't convert to np.record
+ type
+
+Record array views were updated in #5943 to return np.record dtype
+where possible, but forgot about the case of sub-arrays.
+
+That's fixed here, so accessing subarray fields by attribute or index
+works sensibly, as well as viewing a record array as a subarray dtype,
+and printing subarrays.
+
+This also happens to fix #6459, since it affects the same lines.
+
+Fixes #6497 #6459
+---
+ numpy/core/records.py | 30 +++++++++++++++++++-----------
+ numpy/core/tests/test_records.py | 23 +++++++++++++++++++++++
+ 2 files changed, 42 insertions(+), 11 deletions(-)
+
+diff --git a/numpy/core/records.py b/numpy/core/records.py
+index 4a99553..4ce3fe9 100644
+--- a/numpy/core/records.py
++++ b/numpy/core/records.py
+@@ -448,12 +448,14 @@ def __getattribute__(self, attr):
+
+ # At this point obj will always be a recarray, since (see
+ # PyArray_GetField) the type of obj is inherited. Next, if obj.dtype is
+- # non-structured, convert it to an ndarray. If obj is structured leave
+- # it as a recarray, but make sure to convert to the same dtype.type (eg
+- # to preserve numpy.record type if present), since nested structured
+- # fields do not inherit type.
++ # non-structured, convert it to an ndarray. Then if obj is structured
++ # with void type convert it to the same dtype.type (eg to preserve
++ # numpy.record type if present), since nested structured fields do not
++ # inherit type. Don't do this for non-void structures though.
+ if obj.dtype.fields:
+- return obj.view(dtype=(self.dtype.type, obj.dtype.fields))
++ if issubclass(obj.dtype.type, nt.void):
++ return obj.view(dtype=(self.dtype.type, obj.dtype))
++ return obj
+ else:
+ return obj.view(ndarray)
+
+@@ -463,8 +465,9 @@ def __getattribute__(self, attr):
+ # Thus, you can't create attributes on-the-fly that are field names.
+ def __setattr__(self, attr, val):
+
+- # Automatically convert (void) dtypes to records.
+- if attr == 'dtype' and issubclass(val.type, nt.void):
++ # Automatically convert (void) structured types to records
++ # (but not non-void structures, subarrays, or non-structured voids)
++ if attr == 'dtype' and issubclass(val.type, nt.void) and val.fields:
+ val = sb.dtype((record, val))
+
+ newattr = attr not in self.__dict__
+@@ -499,7 +502,9 @@ def __getitem__(self, indx):
+ # we might also be returning a single element
+ if isinstance(obj, ndarray):
+ if obj.dtype.fields:
+- return obj.view(dtype=(self.dtype.type, obj.dtype.fields))
++ if issubclass(obj.dtype.type, nt.void):
++ return obj.view(dtype=(self.dtype.type, obj.dtype))
++ return obj
+ else:
+ return obj.view(type=ndarray)
+ else:
+@@ -519,11 +524,14 @@ def __repr__(self):
+ # If this is a full record array (has numpy.record dtype),
+ # or if it has a scalar (non-void) dtype with no records,
+ # represent it using the rec.array function. Since rec.array
+- # converts dtype to a numpy.record for us, use only dtype.descr,
+- # not repr(dtype).
++ # converts dtype to a numpy.record for us, convert back
++ # to non-record before printing
++ plain_dtype = self.dtype
++ if plain_dtype.type is record:
++ plain_dtype = sb.dtype((nt.void, plain_dtype))
+ lf = '\n'+' '*len("rec.array(")
+ return ('rec.array(%s, %sdtype=%s)' %
+- (lst, lf, repr(self.dtype.descr)))
++ (lst, lf, plain_dtype))
+ else:
+ # otherwise represent it using np.array plus a view
+ # This should only happen if the user is playing
+diff --git a/numpy/core/tests/test_records.py b/numpy/core/tests/test_records.py
+index 7a18f29..290bc4f 100644
+--- a/numpy/core/tests/test_records.py
++++ b/numpy/core/tests/test_records.py
+@@ -121,6 +121,23 @@ def test_recarray_views(self):
+ assert_equal(type(rv), np.recarray)
+ assert_equal(rv.dtype.type, np.record)
+
++ # check that accessing nested structures keep record type, but
++ # not for subarrays, non-void structures, non-structured voids
++ test_dtype = [('a', 'f4,f4'), ('b', 'V8'), ('c', ('f4',2)),
++ ('d', ('i8', 'i4,i4'))]
++ r = np.rec.array([((1,1), b'11111111', [1,1], 1),
++ ((1,1), b'11111111', [1,1], 1)], dtype=test_dtype)
++ assert_equal(r.a.dtype.type, np.record)
++ assert_equal(r.b.dtype.type, np.void)
++ assert_equal(r.c.dtype.type, np.float32)
++ assert_equal(r.d.dtype.type, np.int64)
++ # check the same, but for views
++ r = np.rec.array(np.ones(4, dtype='i4,i4'))
++ assert_equal(r.view('f4,f4').dtype.type, np.record)
++ assert_equal(r.view(('i4',2)).dtype.type, np.int32)
++ assert_equal(r.view('V8').dtype.type, np.void)
++ assert_equal(r.view(('i8', 'i4,i4')).dtype.type, np.int64)
++
+ #check that we can undo the view
+ arrs = [np.ones(4, dtype='f4,i4'), np.ones(4, dtype='f8')]
+ for arr in arrs:
+@@ -135,6 +152,12 @@ def test_recarray_repr(self):
+ a = np.array(np.ones(4, dtype='f8'))
+ assert_(repr(np.rec.array(a)).startswith('rec.array'))
+
++ # check that the 'np.record' part of the dtype isn't shown
++ a = np.rec.array(np.ones(3, dtype='i4,i4'))
++ assert_equal(repr(a).find('numpy.record'), -1)
++ a = np.rec.array(np.ones(3, dtype='i4'))
++ assert_(repr(a).find('dtype=int32') != -1)
++
+ def test_recarray_from_names(self):
+ ra = np.rec.array([
+ (1, 'abc', 3.7000002861022949, 0),
diff --git a/dev-python/numpy/files/numpy-1.10.1-backport-2.patch b/dev-python/numpy/files/numpy-1.10.1-backport-2.patch
new file mode 100644
index 0000000..9c33704
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.10.1-backport-2.patch
@@ -0,0 +1,73 @@
+From 0d25dc4175e00cdaf9545e8b1b1a5b879cf67248 Mon Sep 17 00:00:00 2001
+From: Ethan Kruse <eakruse@uw.edu>
+Date: Mon, 19 Oct 2015 13:29:01 -0700
+Subject: [PATCH 1/2] Potential fix for #6462
+
+---
+ numpy/lib/function_base.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/numpy/lib/function_base.py b/numpy/lib/function_base.py
+index 555d083..fef69df 100644
+--- a/numpy/lib/function_base.py
++++ b/numpy/lib/function_base.py
+@@ -3339,7 +3339,7 @@ def _median(a, axis=None, out=None, overwrite_input=False):
+ indexer[axis] = slice(index-1, index+1)
+
+ # Check if the array contains any nan's
+- if np.issubdtype(a.dtype, np.inexact):
++ if np.issubdtype(a.dtype, np.inexact) and sz > 0:
+ # warn and return nans like mean would
+ rout = mean(part[indexer], axis=axis, out=out)
+ part = np.rollaxis(part, axis, part.ndim)
+
+From 59d859fb2160950ac93267d7461ad952145c8724 Mon Sep 17 00:00:00 2001
+From: Ethan Kruse <eakruse@uw.edu>
+Date: Tue, 20 Oct 2015 11:40:49 -0700
+Subject: [PATCH 2/2] Added tests for median of empty arrays
+
+---
+ numpy/lib/tests/test_function_base.py | 30 ++++++++++++++++++++++++++++++
+ 1 file changed, 30 insertions(+)
+
+diff --git a/numpy/lib/tests/test_function_base.py b/numpy/lib/tests/test_function_base.py
+index 4516c92..aa41c1f 100644
+--- a/numpy/lib/tests/test_function_base.py
++++ b/numpy/lib/tests/test_function_base.py
+@@ -2597,6 +2597,36 @@ def test_nan_behavior(self):
+ assert_equal(np.median(a, (0, 2)), b)
+ assert_equal(len(w), 1)
+
++ def test_empty(self):
++ # empty arrays
++ a = np.array([], dtype=float)
++ with warnings.catch_warnings(record=True) as w:
++ warnings.filterwarnings('always', '', RuntimeWarning)
++ assert_equal(np.median(a), np.nan)
++ assert_(w[0].category is RuntimeWarning)
++
++ # multiple dimensions
++ a = np.array([], dtype=float, ndmin=3)
++ # no axis
++ with warnings.catch_warnings(record=True) as w:
++ warnings.filterwarnings('always', '', RuntimeWarning)
++ assert_equal(np.median(a), np.nan)
++ assert_(w[0].category is RuntimeWarning)
++
++ # axis 0 and 1
++ b = np.array([], dtype=float, ndmin=2)
++ with warnings.catch_warnings(record=True) as w:
++ warnings.filterwarnings('always', '', RuntimeWarning)
++ assert_equal(np.median(a, axis=0), b)
++ assert_equal(np.median(a, axis=1), b)
++
++ # axis 2
++ b = np.array(np.nan, dtype=float, ndmin=2)
++ with warnings.catch_warnings(record=True) as w:
++ warnings.filterwarnings('always', '', RuntimeWarning)
++ assert_equal(np.median(a, axis=2), b)
++ assert_(w[0].category is RuntimeWarning)
++
+ def test_object(self):
+ o = np.arange(7.)
+ assert_(type(np.median(o.astype(object))), float)
diff --git a/dev-python/numpy/files/numpy-1.10.1-musl-fix.patch b/dev-python/numpy/files/numpy-1.10.1-musl-fix.patch
new file mode 100644
index 0000000..b5b891c
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.10.1-musl-fix.patch
@@ -0,0 +1,20 @@
+--- a/numpy/core/src/private/npy_config.h.orig 2015-08-11 19:03:43.000000000 +0200
++++ b/numpy/core/src/private/npy_config.h 2015-10-08 08:20:25.489203036 +0200
+@@ -71,7 +71,7 @@
+
+
+ /* Disable broken gnu trig functions on linux */
+-#if defined(__linux__) && defined(__GNUC__)
++#if defined(__linux__) && defined(__GLIBC__)
+
+ #if defined(HAVE_FEATURES_H)
+ #include <features.h>
+@@ -96,6 +96,6 @@
+ #endif
+ #undef TRIG_OK
+
+-#endif /* defined(__linux__) && defined(__GNUC__) */
++#endif /* defined(__linux__) && defined(__GLIBC__) */
+
+ #endif
+
diff --git a/dev-python/numpy/files/numpy-1.9.2-no-hardcode-blas.patch b/dev-python/numpy/files/numpy-1.9.2-no-hardcode-blas.patch
new file mode 100644
index 0000000..674dbfa
--- /dev/null
+++ b/dev-python/numpy/files/numpy-1.9.2-no-hardcode-blas.patch
@@ -0,0 +1,35 @@
+ numpy/distutils/system_info.py | 21 +--------------------
+ 1 file changed, 1 insertion(+), 20 deletions(-)
+
+diff --git a/numpy/distutils/system_info.py b/numpy/distutils/system_info.py
+index a050430..d0878a5 100644
+--- a/numpy/distutils/system_info.py
++++ b/numpy/distutils/system_info.py
+@@ -303,26 +303,7 @@ def get_info(name, notfound_action=0):
+ 1 - display warning message
+ 2 - raise error
+ """
+- cl = {'atlas': atlas_info, # use lapack_opt or blas_opt instead
+- 'atlas_threads': atlas_threads_info, # ditto
+- 'atlas_blas': atlas_blas_info,
+- 'atlas_blas_threads': atlas_blas_threads_info,
+- 'lapack_atlas': lapack_atlas_info, # use lapack_opt instead
+- 'lapack_atlas_threads': lapack_atlas_threads_info, # ditto
+- 'atlas_3_10': atlas_3_10_info, # use lapack_opt or blas_opt instead
+- 'atlas_3_10_threads': atlas_3_10_threads_info, # ditto
+- 'atlas_3_10_blas': atlas_3_10_blas_info,
+- 'atlas_3_10_blas_threads': atlas_3_10_blas_threads_info,
+- 'lapack_atlas_3_10': lapack_atlas_3_10_info, # use lapack_opt instead
+- 'lapack_atlas_3_10_threads': lapack_atlas_3_10_threads_info, # ditto
+- 'mkl': mkl_info,
+- # openblas which may or may not have embedded lapack
+- 'openblas': openblas_info, # use blas_opt instead
+- # openblas with embedded lapack
+- 'openblas_lapack': openblas_lapack_info, # use blas_opt instead
+- 'lapack_mkl': lapack_mkl_info, # use lapack_opt instead
+- 'blas_mkl': blas_mkl_info, # use blas_opt instead
+- 'x11': x11_info,
++ cl = {'x11': x11_info,
+ 'fft_opt': fft_opt_info,
+ 'fftw': fftw_info,
+ 'fftw2': fftw2_info,
diff --git a/dev-python/numpy/numpy-1.10.1-r1.ebuild b/dev-python/numpy/numpy-1.10.1-r1.ebuild
new file mode 100644
index 0000000..ab6df8b
--- /dev/null
+++ b/dev-python/numpy/numpy-1.10.1-r1.ebuild
@@ -0,0 +1,156 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 python3_{3,4,5} )
+PYTHON_REQ_USE="threads(+)"
+
+FORTRAN_NEEDED=lapack
+
+inherit distutils-r1 eutils flag-o-matic fortran-2 multilib multiprocessing toolchain-funcs versionator
+
+DOC_PV="1.9.1"
+DOC_P="${PN}-${DOC_PV}"
+
+DESCRIPTION="Fast array and numerical python library"
+HOMEPAGE="http://www.numpy.org/"
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz
+ doc? (
+ http://docs.scipy.org/doc/${DOC_P}/${PN}-html-${DOC_PV}.zip
+ http://docs.scipy.org/doc/${DOC_P}/${PN}-ref-${DOC_PV}.pdf
+ http://docs.scipy.org/doc/${DOC_P}/${PN}-user-${DOC_PV}.pdf
+ )"
+# It appears the docs haven't been upgraded, still @ 1.8.1
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~x86-freebsd ~x86-interix ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos ~x86-macos ~sparc-solaris ~x64-solaris ~x86-solaris"
+IUSE="doc lapack test"
+
+RDEPEND="
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ lapack? ( virtual/cblas virtual/lapack )"
+DEPEND="${RDEPEND}
+ doc? ( app-arch/unzip )
+ lapack? ( virtual/pkgconfig )
+ test? ( >=dev-python/nose-1.0[${PYTHON_USEDEP}] )"
+
+# Uses distutils.command.config.
+DISTUTILS_IN_SOURCE_BUILD=1
+
+PATCHES=(
+ "${FILESDIR}"/${PN}-1.9.2-no-hardcode-blas.patch
+ "${FILESDIR}"/${PN}-1.10.1-musl-fix.patch
+ "${FILESDIR}"/${P}-backport-1.patch
+ "${FILESDIR}"/${P}-backport-2.patch
+)
+
+src_unpack() {
+ default
+ if use doc; then
+ unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
+ fi
+}
+
+pc_incdir() {
+ $(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+ sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libdir() {
+ $(tc-getPKG_CONFIG) --libs-only-L $@ | \
+ sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||'
+}
+
+pc_libs() {
+ $(tc-getPKG_CONFIG) --libs-only-l $@ | \
+ sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+ -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+ | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||'
+}
+
+python_prepare_all() {
+ if use lapack; then
+ append-ldflags "$($(tc-getPKG_CONFIG) --libs-only-other cblas lapack)"
+ local libdir="${EPREFIX}"/usr/$(get_libdir)
+ # make sure _dotblas.so gets built
+ sed -i -e '/NO_ATLAS_INFO/,+1d' numpy/core/setup.py || die
+ cat >> site.cfg <<-EOF
+ [blas]
+ include_dirs = $(pc_incdir cblas)
+ library_dirs = $(pc_libdir cblas blas):${libdir}
+ blas_libs = $(pc_libs cblas blas)
+ [lapack]
+ library_dirs = $(pc_libdir lapack):${libdir}
+ lapack_libs = $(pc_libs lapack)
+ EOF
+ else
+ export {ATLAS,PTATLAS,BLAS,LAPACK,MKL}=None
+ fi
+
+ export CC="$(tc-getCC) ${CFLAGS}"
+
+ append-flags -fno-strict-aliasing
+
+ # See progress in http://projects.scipy.org/scipy/numpy/ticket/573
+ # with the subtle difference that we don't want to break Darwin where
+ # -shared is not a valid linker argument
+ if [[ ${CHOST} != *-darwin* ]]; then
+ append-ldflags -shared
+ fi
+
+ # only one fortran to link with:
+ # linking with cblas and lapack library will force
+ # autodetecting and linking to all available fortran compilers
+ append-fflags -fPIC
+ if use lapack; then
+ NUMPY_FCONFIG="config_fc --noopt --noarch"
+ # workaround bug 335908
+ [[ $(tc-getFC) == *gfortran* ]] && NUMPY_FCONFIG+=" --fcompiler=gnu95"
+ fi
+
+ # don't version f2py, we will handle it.
+ sed -i -e '/f2py_exe/s:+os\.path.*$::' numpy/f2py/setup.py || die
+
+ # we don't have f2py-3.3
+ sed \
+ -e "/f2py_cmd/s:'f2py'.*:'f2py':g" \
+ -i numpy/tests/test_scripts.py || die
+
+ distutils-r1_python_prepare_all
+}
+
+python_compile() {
+ distutils-r1_python_compile -j $(makeopts_jobs) ${NUMPY_FCONFIG}
+}
+
+python_test() {
+ distutils_install_for_testing ${NUMPY_FCONFIG}
+
+ cd "${TMPDIR}" || die
+ ${EPYTHON} -c "
+import numpy, sys
+r = numpy.test(label='full', verbose=3)
+sys.exit(0 if r.wasSuccessful() else 1)" || die "Tests fail with ${EPYTHON}"
+}
+
+python_install() {
+ distutils-r1_python_install ${NUMPY_FCONFIG}
+}
+
+python_install_all() {
+ distutils-r1_python_install_all
+
+ dodoc COMPATIBILITY DEV_README.txt THANKS.txt
+
+ if use doc; then
+ dohtml -r "${WORKDIR}"/html/*
+ dodoc "${DISTDIR}"/${PN}-{user,ref}-${DOC_PV}.pdf
+ fi
+
+ # absent in 1.9
+ #docinto f2py
+ #dodoc numpy/f2py/docs/*.txt
+ #doman numpy/f2py/f2py.1
+}