/[gentoo-x86]/sci-biology/bowtie/bowtie-0.12.3.ebuild
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Contents of /sci-biology/bowtie/bowtie-0.12.3.ebuild

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Revision 1.3 - (hide annotations) (download)
Fri Jul 16 17:22:29 2010 UTC (9 years, 7 months ago) by hwoarang
Branch: MAIN
Changes since 1.2: +2 -2 lines
Stable on amd64 wrt bug #328413
(Portage version: 2.2_rc67/cvs/Linux x86_64)

1 weaver 1.1 # Copyright 1999-2010 Gentoo Foundation
2     # Distributed under the terms of the GNU General Public License v2
3 hwoarang 1.3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.3.ebuild,v 1.2 2010/07/16 09:42:31 fauli Exp $
4 weaver 1.1
5     EAPI="2"
6    
7     DESCRIPTION="An ultrafast memory-efficient short read aligner"
8     HOMEPAGE="http://bowtie-bio.sourceforge.net/"
9     SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip"
10    
11     LICENSE="Artistic"
12     SLOT="0"
13     IUSE=""
14 hwoarang 1.3 KEYWORDS="amd64 x86"
15 weaver 1.1
16     DEPEND="app-arch/unzip"
17     RDEPEND=""
18    
19     # NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de)
20     # TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS
21    
22     src_prepare() {
23     sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die
24     }
25    
26     src_install() {
27     dobin bowtie bowtie-* || die
28     exeinto /usr/share/${PN}/scripts
29     doexe scripts/* || die
30     newman MANUAL bowtie.1
31     dodoc AUTHORS NEWS TUTORIAL
32     }

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