/[gentoo-x86]/sci-biology/bowtie/bowtie-0.12.5.ebuild
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Revision 1.3 - (show annotations) (download)
Sun Aug 11 13:32:35 2013 UTC (6 years, 6 months ago) by jlec
Branch: MAIN
CVS Tags: HEAD
Changes since 1.2: +1 -1 lines
FILE REMOVED
sci-biology/bowtie: Drop old

(Portage version: 2.2.0_alpha196/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

1 # Copyright 1999-2010 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.5.ebuild,v 1.2 2010/09/30 07:24:16 grobian Exp $
4
5 EAPI="2"
6
7 DESCRIPTION="An ultrafast memory-efficient short read aligner"
8 HOMEPAGE="http://bowtie-bio.sourceforge.net/"
9 SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip"
10
11 LICENSE="Artistic"
12 SLOT="0"
13 IUSE=""
14 KEYWORDS="~amd64 ~x86 ~x64-macos"
15
16 DEPEND="app-arch/unzip"
17 RDEPEND=""
18
19 # NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de)
20 # TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS
21
22 src_prepare() {
23 sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die
24 }
25
26 src_install() {
27 dobin bowtie bowtie-* || die
28 exeinto /usr/share/${PN}/scripts
29 doexe scripts/* || die
30 newman MANUAL bowtie.1
31 dodoc AUTHORS NEWS TUTORIAL
32 }

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