/[gentoo-x86]/sci-biology/maq/maq-0.7.1-r1.ebuild
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Contents of /sci-biology/maq/maq-0.7.1-r1.ebuild

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Revision 1.6 - (show annotations) (download)
Sat Jun 23 10:15:20 2012 UTC (7 years, 7 months ago) by jlec
Branch: MAIN
CVS Tags: HEAD
Changes since 1.5: +4 -3 lines
sci-biology/maq: Add patch for gcc-4.7, #422869

(Portage version: 2.2.0_alpha110/cvs/Linux x86_64)

1 # Copyright 1999-2012 Gentoo Foundation
2 # Distributed under the terms of the GNU General Public License v2
3 # $Header: /var/cvsroot/gentoo-x86/sci-biology/maq/maq-0.7.1-r1.ebuild,v 1.5 2011/12/18 19:53:20 phajdan.jr Exp $
4
5 EAPI=4
6
7 inherit autotools eutils
8
9 DESCRIPTION="Mapping and Assembly with Qualities - mapping Solexa and SOLiD reads to reference sequences"
10 HOMEPAGE="http://maq.sourceforge.net/"
11 SRC_URI="
12 mirror://sourceforge/${PN}/${P}.tar.bz2
13 mirror://sourceforge/${PN}/calib-36.dat.gz"
14
15 LICENSE="GPL-3"
16 SLOT="0"
17 IUSE=""
18 KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
19
20 RDEPEND="sys-libs/zlib"
21 DEPEND="${RDEPEND}"
22
23 src_prepare() {
24 epatch \
25 "${FILESDIR}"/${P}-flags.patch \
26 "${FILESDIR}"/${P}-bfr-overfl.patch \
27 "${FILESDIR}"/${P}-gcc-4.7.patch
28 sed \
29 -e '/ext_CFLAGS/s:-m64::g' \
30 -i configure* || die
31 eautoreconf
32 }
33
34 src_install() {
35 default
36 insinto /usr/share/maq
37 doins "${WORKDIR}"/*.dat
38 doman maq.1
39 dodoc ${PN}.pdf
40 }

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